View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_62 (Length: 315)
Name: NF1370_low_62
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 12973296 - 12973576
Alignment:
| Q |
30 |
ttgagctacatattcaatttnnnnnnnntgtacgactcaattcacataacacaaaacaacaacaatcaagccttatcccacatcgactatttcactttat |
129 |
Q |
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| T |
12973296 |
ttgagctacatattcaatttaaaaaaaatgtatgactcaattcacataacacaaaacaacaacaatcaagccttatcccacatcgactattgcactttat |
12973395 |
T |
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| Q |
130 |
atcataatctatacgtttagattaatgttattgaattatactactaggcaaaaatgaaatgaagtgcaagttgataaaaatcaaaggcgggataatcaga |
229 |
Q |
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| T |
12973396 |
atcataatctatacgtttagattaatgttattgaattatactactatgcaaaaatgaaatgaagtgcaagttgataaaaatcaaaggcgggataatcaga |
12973495 |
T |
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| Q |
230 |
acataagggaatgggggtggacatactggggtttcatcagtaggatcatgaaaagatcgacataatatactctctgctcct |
310 |
Q |
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| T |
12973496 |
acataaggaaatgggggtggacatactggggtttcatcagtaggatcatgaaaagatcgacataatatactgtctgatcct |
12973576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 13884260 - 13884302
Alignment:
| Q |
256 |
tggggtttcatcagtaggatcatgaaaagatcgacataatata |
298 |
Q |
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| T |
13884260 |
tggggtttcatcagtaggatcatgaaaagactgacataatata |
13884302 |
T |
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