View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_63 (Length: 313)
Name: NF1370_low_63
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 2006350 - 2006520
Alignment:
| Q |
81 |
gcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttagatcaatatttactatatcaaatatgttagtgaaagatttt |
180 |
Q |
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| T |
2006350 |
gcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttagatcaatatttactatatcaaatatattagtgaaagatttt |
2006449 |
T |
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| Q |
181 |
cctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttctgtggt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2006450 |
cctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttctatggt |
2006520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 1743975 - 1743862
Alignment:
| Q |
138 |
tagatcaatatttactatatcaaatatgttagtgaaagattttcctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggag |
237 |
Q |
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|||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||||||| |
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| T |
1743975 |
tagatcaacatttattatatcaaatatgttattgaaagattttcctcaagaatgttgggaatcaatcttcaaattccttggccaaggaaaagatttggag |
1743876 |
T |
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| Q |
238 |
tctgtttctgtggt |
251 |
Q |
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| T |
1743875 |
tctgtttctatggt |
1743862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 25419864 - 25419804
Alignment:
| Q |
81 |
gcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttaga |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25419864 |
gcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttaga |
25419804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 5373571 - 5373518
Alignment:
| Q |
89 |
ttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttagat |
142 |
Q |
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|||||||| |||||||||||| |||||||||| ||| || |||||||| ||||| |
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| T |
5373571 |
ttgcttgaatcctcaggtcttctaggtgccaaacctacttctacacctctagat |
5373518 |
T |
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