View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1370_low_76 (Length: 254)

Name: NF1370_low_76
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1370_low_76
NF1370_low_76
[»] chr5 (1 HSPs)
chr5 (25-250)||(2259137-2259362)
[»] chr4 (3 HSPs)
chr4 (55-254)||(37529155-37529356)
chr4 (125-248)||(50164581-50164706)
chr4 (25-132)||(50164283-50164390)
[»] chr1 (2 HSPs)
chr1 (55-254)||(28964342-28964543)
chr1 (55-254)||(28972466-28972667)
[»] chr2 (2 HSPs)
chr2 (167-203)||(14904798-14904834)
chr2 (167-202)||(29977034-29977069)
[»] chr8 (1 HSPs)
chr8 (167-201)||(38291439-38291473)
[»] chr3 (1 HSPs)
chr3 (121-159)||(40415914-40415952)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 2259362 - 2259137
Alignment:
Q  25 tttggatgctattcgctttgatgtccttttaagtcaacctatatcatttcaaattcctccatatatggtcattggttgaaatgcaggtgtgtttttctaa 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  2259362 tttggatgctattcgctttgatgtccttttaagtcaacctatatcatttcaaattcctacatatatggtcattggttgaaatgcagatgtgtttttctaa 2259263  T
Q  125 gttgacaaaatatatccttattagacattttaaaaatattggtttttaattgagtctattttttggtaaaataattaccnnnnnnnctctatctctttca 224  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  2259262 gttgacaaaatatatccttatgagacattttaaaaatattggtttttaattgagtctattttttggtaaaataattaccaaaaaaactctatctctttca 2259163  T
Q  225 acaaaatcataaaattacgaacaact 250  Q
    |||||||||| |||||||||||||||    
T  2259162 acaaaatcatgaaattacgaacaact 2259137  T

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Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 55 - 254
Target Start/End: Complemental strand, 37529356 - 37529155
Alignment:
Q  55 aagtcaacctatatcatttcaaattcctccatatatggtcattggttgaaatgcaggtgtgtttttctaagttgac-aaaatatatccttattagacatt 153  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||| |||||||    
T  37529356 aagtcaacctatatcatttcaaattcctacatatatggtcattggttgaaatgcatgtgtgtttttataagttgacaaaaatatatgcttatgagacatt 37529257  T
Q  154 ttaaaaatattggtttttaattgagtct-attttttggtaaaataattaccnnnnnnnctctatctctttcaacaaaatcataaaattacgaacaactca 252  Q
    ||||||||||| |||||||||||||||| |||||||||  |||||||||||       |||||||||||||||||||||||||||||||| |||||||||    
T  37529256 ttaaaaatattagtttttaattgagtctaattttttggataaataattaccaaaaaaactctatctctttcaacaaaatcataaaattaccaacaactca 37529157  T
Q  253 ct 254  Q
    ||    
T  37529156 ct 37529155  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 248
Target Start/End: Original strand, 50164581 - 50164706
Alignment:
Q  125 gttgacaaaatatatccttattagacattttaaaaatattggtttttaattgagtcta--ttttttggtaaaataattaccnnnnnnnctctatctcttt 222  Q
    |||||||||||||||  |||  ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||       ||| ||||||||    
T  50164581 gttgacaaaatatatatttacgagacattttaaaaatattggtttttaattgagtctattttttttggtaaaataattacccaaaaaactcaatctcttt 50164680  T
Q  223 caacaaaatcataaaattacgaacaa 248  Q
    |||||||||||||||||||| |||||    
T  50164681 caacaaaatcataaaattacaaacaa 50164706  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 50164283 - 50164390
Alignment:
Q  25 tttggatgctattcgctttgatgtccttttaagtcaacctatatcatttcaaattcctccatatatggtcattggttgaaatgcaggtgtgtttttctaa 124  Q
    ||||||| ||||||||||| ||| |||||  ||||||||||||||||||||||||||| || |||||||||||||||||||| ||  |||||| ||||||    
T  50164283 tttggatactattcgctttcatgccctttatagtcaacctatatcatttcaaattcctacaaatatggtcattggttgaaatacaaatgtgttattctaa 50164382  T
Q  125 gttgacaa 132  Q
    ||||||||    
T  50164383 gttgacaa 50164390  T

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Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 55 - 254
Target Start/End: Original strand, 28964342 - 28964543
Alignment:
Q  55 aagtcaacctatatcatttcaaattcctccatatatggtcattggttgaaatgcaggtgtgtttttctaagttgac-aaaatatatccttattagacatt 153  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||| |||||||    
T  28964342 aagtcaacctatatcatttcaaattcctacatatatggtcattggttgaaatgcatgtgtgtttttataagttgacaaaaatatatgcttatgagacatt 28964441  T
Q  154 ttaaaaatattggtttttaattgagtct-attttttggtaaaataattaccnnnnnnnctctatctctttcaacaaaatcataaaattacgaacaactca 252  Q
    ||||||||||| |||||||||||||||| |||||||||  |||||||||||       |||||||||||||||||||||||||||||||| |||||||||    
T  28964442 ttaaaaatattagtttttaattgagtctaattttttggataaataattaccaaaaaaactctatctctttcaacaaaatcataaaattaccaacaactca 28964541  T
Q  253 ct 254  Q
    ||    
T  28964542 ct 28964543  T

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Target: chr1; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 55 - 254
Target Start/End: Original strand, 28972466 - 28972667
Alignment:
Q  55 aagtcaacctatatcatttcaaattcctccatatatggtcattggttgaaatgcaggtgtgtttttctaagttgac-aaaatatatccttattagacatt 153  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||| |||||||    
T  28972466 aagtcaacctatatcatttcaaattcctacatatatggtcattggttgaaatgcatgtgtgtttttataagttgacaaaaatatatgcttatgagacatt 28972565  T
Q  154 ttaaaaatattggtttttaattgagtct-attttttggtaaaataattaccnnnnnnnctctatctctttcaacaaaatcataaaattacgaacaactca 252  Q
    ||||||||||| |||||||||||||||| |||||||||  |||||||||||       |||||||||||||||||||||||||||||||| |||||||||    
T  28972566 ttaaaaatattagtttttaattgagtctaattttttggataaataattaccaaaaaaactctatctctttcaacaaaatcataaaattaccaacaactca 28972665  T
Q  253 ct 254  Q
    ||    
T  28972666 ct 28972667  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 14904798 - 14904834
Alignment:
Q  167 tttttaattgagtctattttttggtaaaataattacc 203  Q
    ||||||||||| |||||||||||||||||||||||||    
T  14904798 tttttaattgaatctattttttggtaaaataattacc 14904834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 202
Target Start/End: Complemental strand, 29977069 - 29977034
Alignment:
Q  167 tttttaattgagtctattttttggtaaaataattac 202  Q
    ||||||||||| ||||||||||||||||||||||||    
T  29977069 tttttaattgaatctattttttggtaaaataattac 29977034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 38291439 - 38291473
Alignment:
Q  167 tttttaattgagtctattttttggtaaaataatta 201  Q
    ||||||||||||| |||||||||||||||||||||    
T  38291439 tttttaattgagtatattttttggtaaaataatta 38291473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 40415914 - 40415952
Alignment:
Q  121 ctaagttgacaaaatatatccttattagacattttaaaa 159  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  40415914 ctaagttgacaaaatatatgtttattagacattttaaaa 40415952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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