View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_78 (Length: 253)
Name: NF1370_low_78
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_78 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 5546203 - 5545961
Alignment:
| Q |
14 |
agaggggggagctagagagagaaataacgtcggatatnnnnnnn---ttattagttgtgttggaatgtaaacgtataattttatttgactacaatattta |
110 |
Q |
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| T |
5546203 |
agaggggggagctagagagagaaataacatcggatataaaaaaaaaattattagttatgttggaatgtaaacatgtaattttatttgactacaatattta |
5546104 |
T |
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| Q |
111 |
ttctcaccttttttaattaatcatcaatagttgtccatgtttcttgtgtgaagttatttgtcggcttcgtgtagatagagccattgatactcaattcaat |
210 |
Q |
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| T |
5546103 |
ttctcaccttttttaattaatcatcaacagttgtccatgtttcttgtgtgaagttatttgtcggcttcgtgtagatagagccattgatactcaattcaat |
5546004 |
T |
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| Q |
211 |
cgaactttgcatgcttgtgcttttaaattatttgaaagtactt |
253 |
Q |
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| T |
5546003 |
cgaactttgcatgcttgtgcttttaaattatttgaaagtactt |
5545961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 5545367 - 5545279
Alignment:
| Q |
117 |
ccttttttaattaatcatcaatagttgtccatgtttcttgtgt---gaagttatttgtcggcttcgtgtagatagagccattgatactc |
202 |
Q |
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| T |
5545367 |
ccttttttaattaatcttcaacagttgtccatgtttcttgtgtgcagaagttatttatcggattcatgcacataaagccattgatactc |
5545279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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