View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1370_low_8 (Length: 577)

Name: NF1370_low_8
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1370_low_8
NF1370_low_8
[»] chr5 (6 HSPs)
chr5 (317-563)||(20914250-20914509)
chr5 (162-248)||(20922218-20922305)
chr5 (168-248)||(20914578-20914659)
chr5 (415-563)||(20921892-20922040)
chr5 (324-381)||(20893041-20893098)
chr5 (334-387)||(20922085-20922136)
[»] chr7 (1 HSPs)
chr7 (62-161)||(12225660-12225759)
[»] chr6 (1 HSPs)
chr6 (62-161)||(10210837-10210936)
[»] chr4 (2 HSPs)
chr4 (398-478)||(43433470-43433550)
chr4 (177-248)||(43434263-43434335)
[»] scaffold0265 (5 HSPs)
scaffold0265 (177-248)||(6372-6444)
scaffold0265 (500-559)||(2587-2647)
scaffold0265 (500-559)||(7476-7536)
scaffold0265 (415-478)||(2501-2565)
scaffold0265 (415-478)||(7390-7454)
[»] chr1 (5 HSPs)
chr1 (177-248)||(21826340-21826412)
chr1 (500-559)||(21825274-21825334)
chr1 (421-478)||(21778869-21778926)
chr1 (415-478)||(21825356-21825420)
chr1 (353-385)||(21778787-21778819)
[»] chr2 (3 HSPs)
chr2 (66-160)||(42926988-42927082)
chr2 (67-161)||(23392066-23392160)
chr2 (323-381)||(8264666-8264724)
[»] chr8 (1 HSPs)
chr8 (323-381)||(27276712-27276768)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 317 - 563
Target Start/End: Complemental strand, 20914509 - 20914250
Alignment:
Q  317 atgaccttttacaatttaaaccatcaaattaattagattttcctttcaatccaatcactctccaaccccccnnnnnnnnnacaaatctgggttcatcc-- 414  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||          ||||| |||||||||||      
T  20914509 atgaccttttacaattcaaaccatcaaattaattagattttcatttcaatccaatcactctccaaccccccttttttttt-caaatttgggttcatcctt 20914411  T
Q  415 ------------ttcattttcttgaaccattcaaagaacaatgacatgcattcatttcaattaagaatgactttacnnnnnnnnnnnnnnnnnnnnntat 502  Q
                ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||                     |||    
T  20914410 catgttcttcaattcattttcttcaaccattcaaagaacaatgacatgcattcattccaattaagaacgactttacaaaaatcattaaaaataaaaatat 20914311  T
Q  503 cacccataggaatcaaaccaaggcacacacactcttgatcatataacttaaccacttgacc 563  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20914310 cacccataggaatcaaaccaaggcacacacactcttaatcatataacttaaccacttgacc 20914250  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 20922305 - 20922218
Alignment:
Q  162 ggtgagacctaggaagcctttgaaaattggtgg-caattaacccaaaccaataagaaacagccatgtgtcctccatcataaaaataaa 248  Q
    ||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20922305 ggtgacacctaggatgcctttaaaaattggtggacaattaacccaaaccaataagaaacagccatgtgtcctccatcataaaaataaa 20922218  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 20914659 - 20914578
Alignment:
Q  168 acctaggaagcctttgaaaattggtgg-caattaacccaaaccaataagaaacagccatgtgtcctccatcataaaaataaa 248  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  20914659 acctaggatgcctttgaaaattggtgggcaattaacccaaaccaatacgaaacagccacgtgtcctccatcataaaaataaa 20914578  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 415 - 563
Target Start/End: Complemental strand, 20922040 - 20921892
Alignment:
Q  415 ttcattttcttgaaccattcaaagaacaatgacatgcattcatttcaattaagaatgactttacnnnnnnnnnnnnnnnnnnnnntatcacccataggaa 514  Q
    ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||                     |||||||||||||||    
T  20922040 ttcatcttcttcaaccattcaaagaacaatgacatgcattcattccaattaagaatggctttacaaaaatcattaaaaataaaaatatcacccataggaa 20921941  T
Q  515 tcaaaccaaggcacacacactcttgatcatataacttaaccacttgacc 563  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  20921940 tcaaaccaaggcacacacactctagatcatataacttaaccacctgacc 20921892  T

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Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 20893041 - 20893098
Alignment:
Q  324 tttacaatttaaaccatcaaattaattagattttcctttcaatccaatcactctccaa 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20893041 tttacaatttaaaccatcaaattaattagattttcctttcaatccaatcactctccaa 20893098  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 20922136 - 20922085
Alignment:
Q  334 aaaccatcaaattaattagattttcctttcaatccaatcactctccaacccccc 387  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  20922136 aaaccatcaaattaattagatttttctttcaatccaa--actctccaacccccc 20922085  T

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Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 12225759 - 12225660
Alignment:
Q  62 actttttgtccttgcaaagacaaaatggtttgcacagattgttgacgttgatttaggggaagcgatggggctcttgaccgctatgcaatgggttaaagat 161  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12225759 actttttgtccttgcaaagacagaatggtttgcaccgattgttgacattgatttaggggaagcgacggggctcttgaccgctatgcaatgggttaaagat 12225660  T

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Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 10210837 - 10210936
Alignment:
Q  62 actttttgtccttgcaaagacaaaatggtttgcacagattgttgacgttgatttaggggaagcgatggggctcttgaccgctatgcaatgggttaaagat 161  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10210837 actttttgtccttgcaaagacagaatggtttgcaccgattgtcgacgttgatttaggggaagcgatggggctcttgaccgctacgtaatgggttaaagat 10210936  T

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Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 398 - 478
Target Start/End: Complemental strand, 43433550 - 43433470
Alignment:
Q  398 caaatctgggttcatccttcattttcttgaaccattcaaagaacaatgacatgcattcatttcaattaagaatgactttac 478  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  43433550 caaatctgggttcatccttcatcttcttcaaccattcaaagaacaatgacatgcattcattccaattaagaatggctttac 43433470  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 43434335 - 43434263
Alignment:
Q  177 gcctttgaaaattggtgg-caattaacccaaaccaataagaaacagccatgtgtcctccatcataaaaataaa 248  Q
    |||||||||||||||||| || || |||||||||||||| ||||||||| |||||||||||||  ||||||||    
T  43434335 gcctttgaaaattggtgggcattttacccaaaccaataaaaaacagccacgtgtcctccatcaacaaaataaa 43434263  T

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Target: scaffold0265 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 6372 - 6444
Alignment:
Q  177 gcctttgaaaattggtgg-caattaacccaaaccaataagaaacagccatgtgtcctccatcataaaaataaa 248  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6372 gcctttgaaaattggtgggcaattaacccaaaccaataagaaacagccacgtgtcctccatcataaaaataaa 6444  T

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Target: scaffold0265; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 500 - 559
Target Start/End: Original strand, 2587 - 2647
Alignment:
Q  500 tatcacccataggaatcaaaccaa-ggcacacacactcttgatcatataacttaaccactt 559  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2587 tatcacccataggaatcaaaccaatggcacacacactcttgatcatataacttaaccactt 2647  T

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Target: scaffold0265; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 500 - 559
Target Start/End: Original strand, 7476 - 7536
Alignment:
Q  500 tatcacccataggaatcaaaccaa-ggcacacacactcttgatcatataacttaaccactt 559  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7476 tatcacccataggaatcaaaccaatggcacacacactcttgatcatataacttaaccactt 7536  T

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Target: scaffold0265; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 478
Target Start/End: Original strand, 2501 - 2565
Alignment:
Q  415 ttcattttcttgaaccattcaaagaa-caatgacatgcattcatttcaattaagaatgactttac 478  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  2501 ttcatcttcttcaaccattcaaagaaacaatgacatgcattcattccaattaagaatggctttac 2565  T

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Target: scaffold0265; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 478
Target Start/End: Original strand, 7390 - 7454
Alignment:
Q  415 ttcattttcttgaaccattcaaagaa-caatgacatgcattcatttcaattaagaatgactttac 478  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  7390 ttcatcttcttcaaccattcaaagaaacaatgacatgcattcattccaattaagaatggctttac 7454  T

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Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 21826412 - 21826340
Alignment:
Q  177 gcctttgaaaattggtgg-caattaacccaaaccaataagaaacagccatgtgtcctccatcataaaaataaa 248  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21826412 gcctttgaaaattggtgggcaattaacccaaaccaataagaaacagccacgtgtcctccatcataaaaataaa 21826340  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 500 - 559
Target Start/End: Complemental strand, 21825334 - 21825274
Alignment:
Q  500 tatcacccataggaatcaaaccaa-ggcacacacactcttgatcatataacttaaccactt 559  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21825334 tatcacccataggaatcaaaccaatggcacacacactcttgatcatataacttaaccactt 21825274  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 21778869 - 21778926
Alignment:
Q  421 ttcttgaaccattcaaagaacaatgacatgcattcatttcaattaagaatgactttac 478  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  21778869 ttcttcaaccattcaaagaacaatgacatgcattcattccaattaagaatggctttac 21778926  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 478
Target Start/End: Complemental strand, 21825420 - 21825356
Alignment:
Q  415 ttcattttcttgaaccattcaaagaa-caatgacatgcattcatttcaattaagaatgactttac 478  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  21825420 ttcatcttcttcaaccattcaaagaaacaatgacatgcattcattccaattaagaatggctttac 21825356  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 21778787 - 21778819
Alignment:
Q  353 attttcctttcaatccaatcactctccaacccc 385  Q
    |||||||||||||||||||||||||||||||||    
T  21778787 attttcctttcaatccaatcactctccaacccc 21778819  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 42927082 - 42926988
Alignment:
Q  66 tttgtccttgcaaagacaaaatggtttgcacagattgttgacgttgatttaggggaagcgatggggctcttgaccgctatgcaatgggttaaaga 160  Q
    |||||| ||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||   |||||||||||||||||||    
T  42927082 tttgtctttgcaaagacagaatggttttcaccgattgttgatgttgatttaggggaagcgatgggactcttgataactatgcaatgggttaaaga 42926988  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 23392066 - 23392160
Alignment:
Q  67 ttgtccttgcaaagacaaaatggtttgcacagattgttgacgttgatttaggggaagcgatggggctcttgaccgctatgcaatgggttaaagat 161  Q
    ||||||||| ||| ||| ||||||||||   |||||||||||||||| | |||||||| ||| | ||||||||||||||||||||||||||||||    
T  23392066 ttgtccttggaaaaacataatggtttgcgtcgattgttgacgttgatgtgggggaagcaatgagactcttgaccgctatgcaatgggttaaagat 23392160  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 8264666 - 8264724
Alignment:
Q  323 ttttacaatttaaaccatcaaattaattagattttcctttcaatccaatcactctccaa 381  Q
    |||||||||||||||||||| | |||||| |||| || |  ||||||||||||||||||    
T  8264666 ttttacaatttaaaccatcacaataattaaatttcccctctaatccaatcactctccaa 8264724  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 27276768 - 27276712
Alignment:
Q  323 ttttacaatttaaaccatcaaattaattagattttcctttcaatccaatcactctccaa 381  Q
    |||||||||||||||||||| |||||||  | ||||| | |||||||||||||||||||    
T  27276768 ttttacaatttaaaccatcacattaatt--aatttccctccaatccaatcactctccaa 27276712  T

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