View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_88 (Length: 239)
Name: NF1370_low_88
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 54084818 - 54084958
Alignment:
| Q |
1 |
ggcagggctctggttatggtgaaggtggtggtgattaattaaggaaaagcatgaattgattgacaaatatatagataatacggttgatttaaataaaaga |
100 |
Q |
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| T |
54084818 |
ggcagggctctggttatggtgaaggtggtggtgattaattaaggaaaagcatgaattgattgacaaatatatagataatacggttgatttaaataaaaga |
54084917 |
T |
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| Q |
101 |
aaatcttagactgtttggtgcaataaattagtagctggtgt |
141 |
Q |
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| T |
54084918 |
aaatcttagactgtttggtgcaataaattagtagctggtgt |
54084958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 54081480 - 54081572
Alignment:
| Q |
12 |
ggttatggtgaaggtggtggtgattaattaaggaaaagcatgaattgattgacaaatatatagataatacggttgatttaaataaaagaaaat |
104 |
Q |
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| T |
54081480 |
ggttatggtgaaggtgggggtgattaattcaggaaatgcatgaattgactaatatataaataactaatatggttgacacaaataaaagaaaat |
54081572 |
T |
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