View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1370_low_9 (Length: 576)

Name: NF1370_low_9
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1370_low_9
NF1370_low_9
[»] chr5 (6 HSPs)
chr5 (317-562)||(20914250-20914509)
chr5 (162-248)||(20922218-20922305)
chr5 (168-248)||(20914578-20914659)
chr5 (414-562)||(20921892-20922040)
chr5 (324-381)||(20893041-20893098)
chr5 (334-387)||(20922085-20922136)
[»] chr7 (1 HSPs)
chr7 (62-161)||(12225660-12225759)
[»] chr6 (1 HSPs)
chr6 (62-161)||(10210837-10210936)
[»] chr4 (2 HSPs)
chr4 (397-477)||(43433470-43433550)
chr4 (177-248)||(43434263-43434335)
[»] scaffold0265 (5 HSPs)
scaffold0265 (177-248)||(6372-6444)
scaffold0265 (499-558)||(2587-2647)
scaffold0265 (499-558)||(7476-7536)
scaffold0265 (414-477)||(2501-2565)
scaffold0265 (414-477)||(7390-7454)
[»] chr1 (5 HSPs)
chr1 (177-248)||(21826340-21826412)
chr1 (499-558)||(21825274-21825334)
chr1 (420-477)||(21778869-21778926)
chr1 (414-477)||(21825356-21825420)
chr1 (353-385)||(21778787-21778819)
[»] chr2 (3 HSPs)
chr2 (66-160)||(42926988-42927082)
chr2 (67-161)||(23392066-23392160)
chr2 (323-381)||(8264666-8264724)
[»] chr8 (1 HSPs)
chr8 (323-381)||(27276712-27276768)


Alignment Details
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 317 - 562
Target Start/End: Complemental strand, 20914509 - 20914250
Alignment:
Q  317 atgaccttttacaatttaaaccatcaaattaattagattttcctttcaatccaatcactctccaaccccccnnnnnnnnacaaatctgggttcatcc--- 413  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||         ||||| |||||||||||       
T  20914509 atgaccttttacaattcaaaccatcaaattaattagattttcatttcaatccaatcactctccaacccccctttttttttcaaatttgggttcatccttc 20914410  T
Q  414 -----------ttcattttcttgaaccattcaaagaacaatgacatgcattcatttcaattaagaatgactttacnnnnnnnnnnnnnnnnnnnnntatc 502  Q
               ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||                     ||||    
T  20914409 atgttcttcaattcattttcttcaaccattcaaagaacaatgacatgcattcattccaattaagaacgactttacaaaaatcattaaaaataaaaatatc 20914310  T
Q  503 acccataggaatcaaaccaaggcacacacactcttgatcatataacttaaccacttgacc 562  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20914309 acccataggaatcaaaccaaggcacacacactcttaatcatataacttaaccacttgacc 20914250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 20922305 - 20922218
Alignment:
Q  162 ggtgagacctaggaagcctttgaaaattggtgg-caattaacccaaaccaataagaaacagccatgtgtcctccatcataaaaataaa 248  Q
    ||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20922305 ggtgacacctaggatgcctttaaaaattggtggacaattaacccaaaccaataagaaacagccatgtgtcctccatcataaaaataaa 20922218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 20914659 - 20914578
Alignment:
Q  168 acctaggaagcctttgaaaattggtgg-caattaacccaaaccaataagaaacagccatgtgtcctccatcataaaaataaa 248  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  20914659 acctaggatgcctttgaaaattggtgggcaattaacccaaaccaatacgaaacagccacgtgtcctccatcataaaaataaa 20914578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 414 - 562
Target Start/End: Complemental strand, 20922040 - 20921892
Alignment:
Q  414 ttcattttcttgaaccattcaaagaacaatgacatgcattcatttcaattaagaatgactttacnnnnnnnnnnnnnnnnnnnnntatcacccataggaa 513  Q
    ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||                     |||||||||||||||    
T  20922040 ttcatcttcttcaaccattcaaagaacaatgacatgcattcattccaattaagaatggctttacaaaaatcattaaaaataaaaatatcacccataggaa 20921941  T
Q  514 tcaaaccaaggcacacacactcttgatcatataacttaaccacttgacc 562  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  20921940 tcaaaccaaggcacacacactctagatcatataacttaaccacctgacc 20921892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 20893041 - 20893098
Alignment:
Q  324 tttacaatttaaaccatcaaattaattagattttcctttcaatccaatcactctccaa 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20893041 tttacaatttaaaccatcaaattaattagattttcctttcaatccaatcactctccaa 20893098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 20922136 - 20922085
Alignment:
Q  334 aaaccatcaaattaattagattttcctttcaatccaatcactctccaacccccc 387  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  20922136 aaaccatcaaattaattagatttttctttcaatccaa--actctccaacccccc 20922085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 12225759 - 12225660
Alignment:
Q  62 actttttgtccttgcaaagacaaaatggtttgcacagattgttgacgttgatttaggggaagcgatggggctcttgaccgctatgcaatgggttaaagat 161  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12225759 actttttgtccttgcaaagacagaatggtttgcaccgattgttgacattgatttaggggaagcgacggggctcttgaccgctatgcaatgggttaaagat 12225660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 10210837 - 10210936
Alignment:
Q  62 actttttgtccttgcaaagacaaaatggtttgcacagattgttgacgttgatttaggggaagcgatggggctcttgaccgctatgcaatgggttaaagat 161  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10210837 actttttgtccttgcaaagacagaatggtttgcaccgattgtcgacgttgatttaggggaagcgatggggctcttgaccgctacgtaatgggttaaagat 10210936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 397 - 477
Target Start/End: Complemental strand, 43433550 - 43433470
Alignment:
Q  397 caaatctgggttcatccttcattttcttgaaccattcaaagaacaatgacatgcattcatttcaattaagaatgactttac 477  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  43433550 caaatctgggttcatccttcatcttcttcaaccattcaaagaacaatgacatgcattcattccaattaagaatggctttac 43433470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 43434335 - 43434263
Alignment:
Q  177 gcctttgaaaattggtgg-caattaacccaaaccaataagaaacagccatgtgtcctccatcataaaaataaa 248  Q
    |||||||||||||||||| || || |||||||||||||| ||||||||| |||||||||||||  ||||||||    
T  43434335 gcctttgaaaattggtgggcattttacccaaaccaataaaaaacagccacgtgtcctccatcaacaaaataaa 43434263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 6372 - 6444
Alignment:
Q  177 gcctttgaaaattggtgg-caattaacccaaaccaataagaaacagccatgtgtcctccatcataaaaataaa 248  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6372 gcctttgaaaattggtgggcaattaacccaaaccaataagaaacagccacgtgtcctccatcataaaaataaa 6444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 499 - 558
Target Start/End: Original strand, 2587 - 2647
Alignment:
Q  499 tatcacccataggaatcaaaccaa-ggcacacacactcttgatcatataacttaaccactt 558  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2587 tatcacccataggaatcaaaccaatggcacacacactcttgatcatataacttaaccactt 2647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 499 - 558
Target Start/End: Original strand, 7476 - 7536
Alignment:
Q  499 tatcacccataggaatcaaaccaa-ggcacacacactcttgatcatataacttaaccactt 558  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7476 tatcacccataggaatcaaaccaatggcacacacactcttgatcatataacttaaccactt 7536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 477
Target Start/End: Original strand, 2501 - 2565
Alignment:
Q  414 ttcattttcttgaaccattcaaagaa-caatgacatgcattcatttcaattaagaatgactttac 477  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  2501 ttcatcttcttcaaccattcaaagaaacaatgacatgcattcattccaattaagaatggctttac 2565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 477
Target Start/End: Original strand, 7390 - 7454
Alignment:
Q  414 ttcattttcttgaaccattcaaagaa-caatgacatgcattcatttcaattaagaatgactttac 477  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  7390 ttcatcttcttcaaccattcaaagaaacaatgacatgcattcattccaattaagaatggctttac 7454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 21826412 - 21826340
Alignment:
Q  177 gcctttgaaaattggtgg-caattaacccaaaccaataagaaacagccatgtgtcctccatcataaaaataaa 248  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21826412 gcctttgaaaattggtgggcaattaacccaaaccaataagaaacagccacgtgtcctccatcataaaaataaa 21826340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 499 - 558
Target Start/End: Complemental strand, 21825334 - 21825274
Alignment:
Q  499 tatcacccataggaatcaaaccaa-ggcacacacactcttgatcatataacttaaccactt 558  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21825334 tatcacccataggaatcaaaccaatggcacacacactcttgatcatataacttaaccactt 21825274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 420 - 477
Target Start/End: Original strand, 21778869 - 21778926
Alignment:
Q  420 ttcttgaaccattcaaagaacaatgacatgcattcatttcaattaagaatgactttac 477  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  21778869 ttcttcaaccattcaaagaacaatgacatgcattcattccaattaagaatggctttac 21778926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 477
Target Start/End: Complemental strand, 21825420 - 21825356
Alignment:
Q  414 ttcattttcttgaaccattcaaagaa-caatgacatgcattcatttcaattaagaatgactttac 477  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  21825420 ttcatcttcttcaaccattcaaagaaacaatgacatgcattcattccaattaagaatggctttac 21825356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 21778787 - 21778819
Alignment:
Q  353 attttcctttcaatccaatcactctccaacccc 385  Q
    |||||||||||||||||||||||||||||||||    
T  21778787 attttcctttcaatccaatcactctccaacccc 21778819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 42927082 - 42926988
Alignment:
Q  66 tttgtccttgcaaagacaaaatggtttgcacagattgttgacgttgatttaggggaagcgatggggctcttgaccgctatgcaatgggttaaaga 160  Q
    |||||| ||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||   |||||||||||||||||||    
T  42927082 tttgtctttgcaaagacagaatggttttcaccgattgttgatgttgatttaggggaagcgatgggactcttgataactatgcaatgggttaaaga 42926988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 23392066 - 23392160
Alignment:
Q  67 ttgtccttgcaaagacaaaatggtttgcacagattgttgacgttgatttaggggaagcgatggggctcttgaccgctatgcaatgggttaaagat 161  Q
    ||||||||| ||| ||| ||||||||||   |||||||||||||||| | |||||||| ||| | ||||||||||||||||||||||||||||||    
T  23392066 ttgtccttggaaaaacataatggtttgcgtcgattgttgacgttgatgtgggggaagcaatgagactcttgaccgctatgcaatgggttaaagat 23392160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 8264666 - 8264724
Alignment:
Q  323 ttttacaatttaaaccatcaaattaattagattttcctttcaatccaatcactctccaa 381  Q
    |||||||||||||||||||| | |||||| |||| || |  ||||||||||||||||||    
T  8264666 ttttacaatttaaaccatcacaataattaaatttcccctctaatccaatcactctccaa 8264724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 27276768 - 27276712
Alignment:
Q  323 ttttacaatttaaaccatcaaattaattagattttcctttcaatccaatcactctccaa 381  Q
    |||||||||||||||||||| |||||||  | ||||| | |||||||||||||||||||    
T  27276768 ttttacaatttaaaccatcacattaatt--aatttccctccaatccaatcactctccaa 27276712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University