View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371-INSERTION-1 (Length: 362)

Name: NF1371-INSERTION-1
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371-INSERTION-1
NF1371-INSERTION-1
[»] chr4 (3 HSPs)
chr4 (8-172)||(44590384-44590548)
chr4 (204-362)||(44590548-44590706)
chr4 (184-267)||(11842419-11842503)
[»] chr8 (4 HSPs)
chr8 (150-285)||(38198080-38198215)
chr8 (153-267)||(30581859-30581973)
chr8 (221-267)||(11521554-11521600)
chr8 (219-257)||(11521649-11521687)
[»] chr6 (1 HSPs)
chr6 (184-253)||(6695070-6695138)
[»] chr7 (1 HSPs)
chr7 (221-285)||(19261872-19261936)
[»] chr3 (3 HSPs)
chr3 (216-267)||(25180037-25180089)
chr3 (221-267)||(54996731-54996777)
chr3 (221-285)||(44302811-44302875)
[»] chr2 (2 HSPs)
chr2 (215-267)||(14196746-14196798)
chr2 (221-263)||(44966762-44966804)
[»] chr1 (2 HSPs)
chr1 (222-255)||(48326854-48326887)
chr1 (208-267)||(11045465-11045525)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 44590384 - 44590548
Alignment:
Q  8 atttgctcattccttttctcaatgtcctctcctccattacattccaaactcacaaacaaagtcttggagtatattatagtgaaggatttatgagaggaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  44590384 atttgctcattccttttctcaatgtcctctcctccattacattccaaactcacaaacaaagtcctggagtatgttatagtgaaggatttatgagaggaag 44590483  T
Q  108 gacggtaagatcatattttccttttctaatttatgaatacactaaaatgttttctaaaacgaatt 172  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||    
T  44590484 gacggtaagatcatattttccttttctaatttacgaacactctaaaatgttttctaaaacgaatt 44590548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 204 - 362
Target Start/End: Original strand, 44590548 - 44590706
Alignment:
Q  204 ttacgttgtagttttaatttttaaaaatatcaattatatttcaaaatatagactaagccctccatagccatcctctccaaaattctattggtttgtttag 303  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  44590548 ttacgttgtaattttaatttttaaaaatatcaattatatttcaaaatatagactaagccctccatagccatcctctacaaaattttattggtttgtttag 44590647  T
Q  304 gtatatgttgtgaatctgcaagaaaaattcttccttcttatgcctttttctttgctata 362  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  44590648 gtatatgttgtgaatctgcaagcaaaactcttccttcttatgcctttttctttgctata 44590706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 11842419 - 11842503
Alignment:
Q  184 aagtattatatcataatttattacgttgtagttttaatttt-taaaaatatcaattatatttcaaaatatagactaagccctcca 267  Q
    ||||||||||| || |||||| |  ||||| ||| |||||| ||||||||||||| ||||||||||||||||||| | |||||||    
T  11842419 aagtattatatgatcatttatcatattgtaatttcaattttttaaaaatatcaataatatttcaaaatatagacttaaccctcca 11842503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 285
Target Start/End: Complemental strand, 38198215 - 38198080
Alignment:
Q  150 taaaatgttttctaaaacgaattaagtgtgaacaaagtattatatcataatttattacgttgtagttttaatttttaaaaatatcaattatatttcaaaa 249  Q
    |||| |||||| ||||| |||||||||||||   ||||||||||| || || ||| | |||||  ||| |||||||||||||||||  | ||||| |||     
T  38198215 taaagtgttttttaaaatgaattaagtgtgattgaagtattatatgatcatatatcatgttgttatttcaatttttaaaaatatcagatgtattttaaag 38198116  T
Q  250 tatagactaagccctccatagccatcctctccaaaa 285  Q
    |||||||| ||||||||| |||||||| ||||||||    
T  38198115 tatagacttagccctccaaagccatcccctccaaaa 38198080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 267
Target Start/End: Complemental strand, 30581973 - 30581859
Alignment:
Q  153 aatgttttctaaaacgaattaagtgtgaacaaagtattatatcataatttattacgttgtagttttaattt-ttaaaaatatcaattatatttcaaaata 251  Q
    ||||| || |||||| ||||||||||||   ||||||||||| || |||||| | |||||| ||| ||||| ||  ||||||||||||||||||||||||    
T  30581973 aatgtgttttaaaacaaattaagtgtgattgaagtattatatgatcatttatcatgttgta-tttcaatttcttttaaatatcaattatatttcaaaata 30581875  T
Q  252 tagactaagccctcca 267  Q
    |||||| |||||||||    
T  30581874 tagacttagccctcca 30581859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 11521600 - 11521554
Alignment:
Q  221 tttttaaaaatatcaattatatttcaaaatatagactaagccctcca 267  Q
    |||||||||||||||| || ||||||||||||||||| |||| ||||    
T  11521600 tttttaaaaatatcaaatagatttcaaaatatagacttagccttcca 11521554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 11521649 - 11521687
Alignment:
Q  219 aatttttaaaaatatcaattatatttcaaaatatagact 257  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  11521649 aattttttaaaatatcaaatatatttcaaaatatagact 11521687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 6695070 - 6695138
Alignment:
Q  184 aagtattatatcataatttattacgttgtagttttaatttttaaaaatatcaattatatttcaaaatata 253  Q
    ||||||||||| || |||||| | |||||| |||  |||||||||| |||||||||||||||||||||||    
T  6695070 aagtattatatgatcatttatcatgttgtaatttctatttttaaaa-tatcaattatatttcaaaatata 6695138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 19261936 - 19261872
Alignment:
Q  221 tttttaaaaatatcaattatatttcaaaatatagactaagccctccatagccatcctctccaaaa 285  Q
    |||||||||||||||| ||||||| ||||||||||||  |||||||  |||| ||| ||||||||    
T  19261936 tttttaaaaatatcaaatatatttgaaaatatagactttgccctccgaagccctcccctccaaaa 19261872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 25180037 - 25180089
Alignment:
Q  216 tttaattttt-aaaaatatcaattatatttcaaaatatagactaagccctcca 267  Q
    |||||||||| ||||||||||| |||||||||| ||||||||| |||||||||    
T  25180037 tttaatttttgaaaaatatcaaatatatttcaagatatagacttagccctcca 25180089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 54996777 - 54996731
Alignment:
Q  221 tttttaaaaatatcaattatatttcaaaatatagactaagccctcca 267  Q
    ||||| |||||||||| |||||||||||||||||||| |||| ||||    
T  54996777 ttttttaaaatatcaaatatatttcaaaatatagacttagccttcca 54996731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 44302811 - 44302875
Alignment:
Q  221 tttttaaaaatatcaattatatttcaaaatatagactaagccctccatagccatcctctccaaaa 285  Q
    ||||| |||| ||||| ||||| |||||||||||||| ||||||  | |||||||| ||||||||    
T  44302811 ttttttaaaacatcaaatatatatcaaaatatagacttagccctataaagccatcccctccaaaa 44302875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 14196798 - 14196746
Alignment:
Q  215 ttttaatttttaaaaatatcaattatatttcaaaatatagactaagccctcca 267  Q
    |||| ||||||  |||||||||||||||||||| ||||||||| |||||||||    
T  14196798 tttttatttttttaaatatcaattatatttcaagatatagacttagccctcca 14196746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 44966762 - 44966804
Alignment:
Q  221 tttttaaaaatatcaattatatttcaaaatatagactaagccc 263  Q
    |||||||||| ||||| |||||||||||||||||||| |||||    
T  44966762 tttttaaaaacatcaaatatatttcaaaatatagacttagccc 44966804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 48326854 - 48326887
Alignment:
Q  222 ttttaaaaatatcaattatatttcaaaatataga 255  Q
    ||||||||||||||| ||||||||||||||||||    
T  48326854 ttttaaaaatatcaaatatatttcaaaatataga 48326887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 11045465 - 11045525
Alignment:
Q  208 gttgtagttttaattttta-aaaatatcaattatatttcaaaatatagactaagccctcca 267  Q
    ||||| ||||||||||||  |||||||||| ||||| |||||||||||||| || ||||||    
T  11045465 gttgttgttttaatttttttaaaatatcaaatatatatcaaaatatagacttagtcctcca 11045525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University