View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371-INSERTION-4 (Length: 455)
Name: NF1371-INSERTION-4
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371-INSERTION-4 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 8 - 455
Target Start/End: Original strand, 31182611 - 31183058
Alignment:
| Q |
8 |
tatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaacattatcttactttataacatgagtctttct |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31182611 |
tatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaacactatcttactttataacatgagtctttct |
31182710 |
T |
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| Q |
108 |
ggttcaatccctgaatctgtcgaaaacttgattaatgtgaatcagcttgcacttgatcgcaatcgcctttctggaaccattccttccacaattggaaact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31182711 |
ggttcaatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgcctttctggaaccattccttccacaattggaaact |
31182810 |
T |
|
| Q |
208 |
tgaaaaatctccaatatttgattttgggattcaatcatttttctggatcaattcctgcctctataggaaatttgatcaatttggtaatccttagtctcca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31182811 |
tgaaaaatctccaatatttgattttgggattcaatcatttttctggatcaattcctgcctctataggaaatttgatcaatttggtaatccttagtctcca |
31182910 |
T |
|
| Q |
308 |
agaaaacaatctcactggaacaattccagctacaattggaaatttgaagctgctcagtgtctttgaattaactaaaaataaacttcatggtagaattcca |
407 |
Q |
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| T |
31182911 |
agaaaacaatctcactggaacaattccagctacaattggaaatttgaagctgctcagtgtctttgaattaactaaaaataaacttcatggtagaattcca |
31183010 |
T |
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| Q |
408 |
aatgaactcaataacaataccaattggtattcctttcttgtgtctgag |
455 |
Q |
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| T |
31183011 |
aatgaactcaataacaacaccaattggtattcctttcttgtgtctgag |
31183058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 39 - 451
Target Start/End: Original strand, 31138927 - 31139339
Alignment:
| Q |
39 |
ccaattccacactccttgtggaacatgtctagcttgaacattatcttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttga |
138 |
Q |
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|||||||| |||||||||||||||||||||||||||| | | |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31138927 |
ccaattcctcactccttgtggaacatgtctagcttgaccttgatctacctttttaacatgagtctttctggttcaatccctgaatctgtcgaaaacttga |
31139026 |
T |
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| Q |
139 |
ttaatgtgaatcagcttgcacttgatcgcaatcgcctttctggaaccattccttccacaattggaaacttgaaaaatctccaatatttgattttgggatt |
238 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| | |
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| T |
31139027 |
ttaatgtgaatgagcttgcacttgatcgcaatcgcctttctggaaccattccttccacaattggaaacttgaaaaacctccaatatttgtttttaggaat |
31139126 |
T |
|
| Q |
239 |
caatcatttttctggatcaattcctgcctctataggaaatttgatcaatttggtaatcc-ttagtctccaagaaaacaatctcactggaacaattccagc |
337 |
Q |
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|||| | | || ||||||||||||||| |||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||| ||||| |||||| | |
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| T |
31139127 |
gaatcgtctgtcaggatcaattcctgccactataggaaatttgatcaatttgg-attcctttagtgtccaagaaaacaatctcacaggaactattccaac |
31139225 |
T |
|
| Q |
338 |
tacaattggaaatttgaagctgctcagtgtctttgaattaactaaaaataaacttcatggtagaattccaaatgaactcaataacaataccaattggtat |
437 |
Q |
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|||||||||||||||||| | ||||| |||||||||| || || |||||||||||||||||||||||||||| ||| |||||| |||||||||| | |
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| T |
31139226 |
tacaattggaaatttgaatcggctcactgtctttgaagtagctgccaataaacttcatggtagaattccaaatggactttataacataaccaattggttt |
31139325 |
T |
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| Q |
438 |
tcctttcttgtgtc |
451 |
Q |
| |
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|||||| ||||||| |
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| T |
31139326 |
tcctttattgtgtc |
31139339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 17 - 451
Target Start/End: Original strand, 31101528 - 31101962
Alignment:
| Q |
17 |
taataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaacattatcttactttataacatgagtctttctggttcaatc |
116 |
Q |
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||||||||| ||| | | ||| |||||||| |||||||||||||||||||||||||||| | | |||| |||||||||||||||||||||||||||||| |
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| T |
31101528 |
taataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatctacctttataacatgagtctttctggttcaatc |
31101627 |
T |
|
| Q |
117 |
cctgaatctgtcgaaaacttgattaatgtgaatcagcttgcacttgatcgcaatcgcctttctggaaccattccttccacaattggaaacttgaaaaatc |
216 |
Q |
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||||| || || |||||||||||||| || || ||||||||| || ||| |||||||||| |||||||||||||||||||||||||||||| | |
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| T |
31101628 |
cctgattcagtacaaaacttgattaatttggatgtacttgcactttatatgaataacctttctggattcattccttccacaattggaaacttgaaaaacc |
31101727 |
T |
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| Q |
217 |
tccaatatttgattttgggattcaatcatttttctggatcaattcctgcctctataggaaatttgatcaatttggtaatccttagtctccaagaaaacaa |
316 |
Q |
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|| | ||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| | | ||||| |||||| |||||| |
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| T |
31101728 |
tcactttattgcttttgcgaaataatcgactttctggatcaattcctgcctctataggaaatttgatcaatttgaaatactttagtgtccaagtaaacaa |
31101827 |
T |
|
| Q |
317 |
tctcactggaacaattccagctacaattggaaatttgaagctgctcagtgtctttgaattaactaaaaataaacttcatggtagaattccaaatgaactc |
416 |
Q |
| |
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|||||| ||||| |||||||||||||| ||||||||||||| ||||| |||||||||| || || || |||||| |||||||||||||||||| ||| |
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| T |
31101828 |
tctcacaggaactattccagctacaatcggaaatttgaagcagctcattgtctttgaagtagcttccaacaaactttatggtagaattccaaatggactt |
31101927 |
T |
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| Q |
417 |
aataacaataccaattggtattcctttcttgtgtc |
451 |
Q |
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|||||| ||||||||||||||||||| ||||||| |
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| T |
31101928 |
tataacattaccaattggtattcctttgttgtgtc |
31101962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 12 - 451
Target Start/End: Original strand, 31057088 - 31057527
Alignment:
| Q |
12 |
ctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaacattatcttacttt-ataacatgagtctttctggt |
110 |
Q |
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|||| ||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||| | | ||| ||||| ||||||| ||||||||||| |
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| T |
31057088 |
ctttctaataacaccaagatgtctggtccaattccacattccttgtggaacatgtctagcttgaccgtactct-actttgataacataggtctttctggt |
31057186 |
T |
|
| Q |
111 |
tcaatccctgaatctgtcgaaaacttgattaatgtgaatcagcttgcacttgatcgcaatcgcctttctggaaccattccttccacaattggaaacttga |
210 |
Q |
| |
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||||||||||| || | |||||||| ||||| |||| | |||||||||||| ||||| |||||||||| ||||||||||||| |||||| |||||| |
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| T |
31057187 |
tcaatccctgattccatacaaaacttggttaatttgaaggaacttgcacttgatatcaatcacctttctggatccattccttccactattggagacttga |
31057286 |
T |
|
| Q |
211 |
aaaatctccaatatttgattttgggattcaatcatttttctggatcaattcctgcctctataggaaatttgatcaatttggtaatccttagtctccaaga |
310 |
Q |
| |
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|||||||| | ||| ||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||| | |||| ||| ||||||| |
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| T |
31057287 |
aaaatctcattaagttgtatttgggaagtaataatctttctggaccaattcctgcctctataggaaatttgatcaatttgcaagtcctcagtgtccaaga |
31057386 |
T |
|
| Q |
311 |
aaacaatctcactggaacaattccagctacaattggaaatttgaagctgctcagtgtctttgaattaactaaaaataaacttcatggtagaattccaaat |
410 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||| |||||| || ||| ||||||||||||||||||||||||||| |
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| T |
31057387 |
aaacaatctcactggaactattccagcttcaattggaaatttgaagtggctcactgtttttgaagtagctaccaataaacttcatggtagaattccaaat |
31057486 |
T |
|
| Q |
411 |
gaactcaataacaataccaattggtattcctttcttgtgtc |
451 |
Q |
| |
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| || |||||| ||||||||| ||||||| ||||||| |
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| T |
31057487 |
ggtctttataacataaccaattggatttcctttgttgtgtc |
31057527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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