View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371-INSERTION-5 (Length: 585)

Name: NF1371-INSERTION-5
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371-INSERTION-5
NF1371-INSERTION-5
[»] chr2 (1 HSPs)
chr2 (8-585)||(9056339-9056918)


Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 8 - 585
Target Start/End: Complemental strand, 9056918 - 9056339
Alignment:
Q  8 aatacaactcccataaaccaaagtatctcgtcttttggaatttgcagttagcactaggacacatgttataagacaaatctttcgctctctgaatggttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| |||||    
T  9056918 aatacaactcccataaaccaaagtatctcgtcttttggaatttgcggttagcactaggaaacatgttataagataaatctttcgctctctgaatagttat 9056819  T
Q  108 tgtcgtgtttgggggctgtggactattgtaaattctttcatcaaacatgttgtcttaaacactctgtctttgcaaacctcatgtatggggagctatagac 207  Q
    ||||||||||| ||| ||| |||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  9056818 tgtcgtgtttgtgggttgtcgactattgtaaattcttaaatcaaacatgttgtcttaaacactttgtctttgcaaacctcatgcatggggagctatagac 9056719  T
Q  208 cgtcatacttagggcaattactcggttactacttccaaaagcatattaaacccatcaccaaataagacaatccataatctgaatatacgactgcccataa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9056718 cgtcatacttagggcaattactcggttactacttccaaaagcatattaaacccatcaccaaataagacaatccataatctgaatatacgattgcccataa 9056619  T
Q  308 gaacgaggcacactgatgttgactcagtcaatagagcactatcacaatgttagaaaaacaaggtaacgattatccgagacaactctacttgaccgggaca 407  Q
    ||||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  9056618 gaacgaggcacacgggtgtttactcggtcaatagagcactatcacaatgttagaaaaacaaggcaacgattatccgagacaagtctacttgaccgggaca 9056519  T
Q  408 cgactagtataaacatcgacacaccacctct--ctctacacacacacccctcattcaagaatcccaactcactttgatcatgaaatatcatcgacaaggc 505  Q
    | || ||||||||| ||||||||||||||||  ||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9056518 caacgagtataaacgtcgacacaccacctctctctctctacacacacccctcattcaagaatcccaactcactttgatcatgaaacatcatcgacaaggc 9056419  T
Q  506 ctcatatgtaaccattgtcaataactcataatcgtcgatccattgtcacataatgtaactattagacgcagatggatcag 585  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||||||    
T  9056418 ctcatatgtaaccattgtcaataactcataatcgtcgatccatcgtcacataatgtaaccattagacacaaatggatcag 9056339  T

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