View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371-INSERTION-6 (Length: 555)
Name: NF1371-INSERTION-6
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371-INSERTION-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Complemental strand, 40173435 - 40172889
Alignment:
| Q |
8 |
ttaaggacatgcatgttaagagcatgaacaatgatggatgttttgtctacttggcacaagttaaatagatattgggtgttt-acatagaatgattgttat |
106 |
Q |
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| T |
40173435 |
ttaagaacatgcatgttaagagcatgaacaatgatggatgttttgtctacttagcacaagttaaatagatattggatgttttagagagaatgattgttat |
40173336 |
T |
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| Q |
107 |
ggaagtgttctctcttcactttattgtagatccaaacaaataaattgcattaaaataattttttgttgaaatgtaataatttagagttttgaggagacca |
206 |
Q |
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| T |
40173335 |
ggaagtgttctctcttcactttattgtagattcaaacaaataaattgcattaaaataattttttgttgaaatgtaataatttagagttttgaggagatca |
40173236 |
T |
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| Q |
207 |
atttagtnnnnnnnnnn----tgttgtgttgaaaatatttgannnnnnnggtatataaagaggacaaagccgaaagaaaaaaccaaagaaatatcttttg |
302 |
Q |
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| T |
40173235 |
atttagtaaaaaaaaaaaatatgttgtgttgaaaatatttgatttttttggtatataaagaggacaaagccgaaa-aaaaaaccaaagaaatatcttttg |
40173137 |
T |
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| Q |
303 |
ttgaaatgtaaatgagatgttgagttcaacacgcatactannnnnnnnnnnnnnaggagcaagcaggaagttctaagttgttactcaactcaagccattc |
402 |
Q |
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| T |
40173136 |
ttgaaatgtaaatgagatgttgagttcaacacgcatactattttttttt-----aggagcaagcaggaagttctaaggtgttactcaactcaagccattc |
40173042 |
T |
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| Q |
403 |
cttttaatggtttgggcgtttttccttacattttgaagaagaaatagtatgcgtgttgaactcgttttattgaggaacagaggaaaatataggtcgtatc |
502 |
Q |
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| T |
40173041 |
cttctaatggtttgggcgtttttccttacattttgaagaagaaatagtatacgtgttgaactcgttttattgaggaacagagaaaaatataggtcgtatc |
40172942 |
T |
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| Q |
503 |
atgaatttgttgtgattgtttaaattttcaagaccttgaagtcttaaccttga |
555 |
Q |
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| T |
40172941 |
atgaatttgttgtgattgtttaaattttcaagaccttgaagtcttaaccttga |
40172889 |
T |
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