View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13710_high_3 (Length: 369)
Name: NF13710_high_3
Description: NF13710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13710_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 39830174 - 39830516
Alignment:
| Q |
18 |
cacaattaagctgcaatataaaagttttaggatcagaaacataacgtcattatttttaatttaaaaaatgaatggaatatatatagcctcaagagagata |
117 |
Q |
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| T |
39830174 |
cacaattaagctgcaatatacaagttttaggatcagaaacataacgtcattatttttaatttaaaaaatgaatggaatatatatagcctcaagagagata |
39830273 |
T |
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| Q |
118 |
aacaa-tacccttggttttgatgagaagttcaccagctttgggacgaggaatgtgaaattcttcaatggtgagaggtttgttgggttcccgaaaaacagc |
216 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39830274 |
aaaaaatacccttggttttgatgagaagttcaccagctttgggacgaggaatgtgaaattcttcaatggtgagaggtttgttgggttcccgaaaaacagc |
39830373 |
T |
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| Q |
217 |
accacgcatgtaagatggtaatccaacaccaccaacagcttctgtgtaaatggtacatgcgtcttcaacattattcaacaactgtttgttattattcaaa |
316 |
Q |
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| T |
39830374 |
accacgcatgtaagatggtaatccaacaccaccaacagcttctgtgtaaatggtacatgcgtcttcaacattattcaacaactgtttgttattattcaaa |
39830473 |
T |
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| Q |
317 |
cgccaacaagacaaccttttcaagttgttgcttctgatgatgt |
359 |
Q |
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| T |
39830474 |
cgccaacaagacaaccttttcaagttgttgcttctgatgatgt |
39830516 |
T |
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