View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13710_high_6 (Length: 246)
Name: NF13710_high_6
Description: NF13710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13710_high_6 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 12453 - 12234
Alignment:
| Q |
9 |
gagatgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgt |
108 |
Q |
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| T |
12453 |
gagatgaatcctaagatagctgattttggcatggcaaggctttttagtattgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtat |
12354 |
T |
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| Q |
109 |
tnnnnnnntagtattggttgtttttaaattagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccata |
208 |
Q |
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| T |
12353 |
taaaaaaatagtattggttgtttttaaattagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccata |
12254 |
T |
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| Q |
209 |
ttgttttgtagtggatatat |
228 |
Q |
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|||||||||||||||||||| |
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| T |
12253 |
ttgttttgtagtggatatat |
12234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 4829 - 4737
Alignment:
| Q |
12 |
atgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaag |
105 |
Q |
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| T |
4829 |
atgaatcctaagatagctgattttggcatggcaagactttttggtgttgaccaaacccagg-aaacacaaatagaattgtgggaacttagtaag |
4737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 6510773 - 6510554
Alignment:
| Q |
9 |
gagatgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgt |
108 |
Q |
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| T |
6510773 |
gagatgaatcctaagatagctgattttggcatggcaaggctttttagtattgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtat |
6510674 |
T |
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| Q |
109 |
tnnnnnnntagtattggttgtttttaaattagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccata |
208 |
Q |
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| T |
6510673 |
taaaaaaatagtattggttgtttttaaattagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccata |
6510574 |
T |
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| Q |
209 |
ttgttttgtagtggatatat |
228 |
Q |
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| T |
6510573 |
ttgttttgtagtggatatat |
6510554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 6503150 - 6503057
Alignment:
| Q |
12 |
atgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaag |
105 |
Q |
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| T |
6503150 |
atgaatcctaagatagctgattttggcatggcaagactttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaag |
6503057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 6515161 - 6515066
Alignment:
| Q |
11 |
gatgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt |
106 |
Q |
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| T |
6515161 |
gatgaatcctaagatagctgattttggcatggcaagactttttggtgtggaccaaacccaggaaaacacaaatagaattgtgggaacctagtaagt |
6515066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 6497816 - 6497722
Alignment:
| Q |
12 |
atgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt |
106 |
Q |
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| T |
6497816 |
atgaatcctaagatatctgattttggcatggcaagactatttggtgtggaccaaacacaggaaaacacaaaaagaattgtgggaacctagtaagt |
6497722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 6525341 - 6525438
Alignment:
| Q |
9 |
gagatgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt |
106 |
Q |
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| T |
6525341 |
gagatgaatcctaagatagcagattttggcatggctagactgtttgatgtggaccaaactcaggaaaatacaaacagaattgtgggaacctagtaagt |
6525438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 6515039 - 6514953
Alignment:
| Q |
143 |
tatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaact-cccatattgttttgtagtggatatat |
228 |
Q |
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| T |
6515039 |
tatgcaagttagtagaaagttgaagataagtaaaaatatttttcttaatttagctgaactatccatattgttatgtagtgggtatat |
6514953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 28829041 - 28828947
Alignment:
| Q |
12 |
atgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt |
106 |
Q |
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|||||| |||||||||| ||||||||||||||||| || || ||| || ||||| || | ||| |||| ||||||||| ||||| |||||||| |
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| T |
28829041 |
atgaatgctaagatagcagattttggcatggcaagactaattcttgtggatcaaacacaagcaaatacaagtagaattgttggaacctagtaagt |
28828947 |
T |
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