View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13710_high_8 (Length: 220)
Name: NF13710_high_8
Description: NF13710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13710_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 56485876 - 56486065
Alignment:
| Q |
16 |
aatatgaatgcagcaaagtattttaatattattagtgatcgatgaatgaatgaatggaacgatcgatccaatttgaaccaacaaacactacaacatcatc |
115 |
Q |
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| T |
56485876 |
aatatgaatgcagcaaagtattttaatattattagtgatcgatgaatgaatgaatggaacgatcgatccaatttgaaccaacaaacactacaacatcatc |
56485975 |
T |
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| Q |
116 |
at------caatgaattatgaattagttagttaattgaagtaagagtatgtacataataacaagtggacgaagaagaggtttgcgttttg |
199 |
Q |
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| T |
56485976 |
atcatcagcaatgaattatgaattagttagttaattgaagtaagagtatgtatataataacaagtggacgaagaagaggtttgcgttttg |
56486065 |
T |
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