View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13710_low_10 (Length: 205)

Name: NF13710_low_10

Description: NF13710

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13710_low_10

[»] scaffold0008 (3 HSPs)

Target: scaffold0008 (Bit Score: 72; Significance: 6e-33; HSPs: 3)

Name: scaffold0008

Description:

Target: scaffold0008; HSP #1

Raw Score: 72; E-Value: 6e-33

Query Start/End: Original strand, 16 - 102

Target Start/End: Original strand, 267182 - 267266

Alignment:

Q	16	ggaatatctttggtcaaagtctcgttatttaacacacaaaaaatatatgtttataattaagtttgcaagtgtttctaactgcaatcc	102	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	267182	ggaatatctttggtcaaagtctcgttatttaacac--aaaaaatatatgtttataattaagtttgcaagtgttcctaactgcaatcc	267266	T

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Target: scaffold0008; HSP #2

Raw Score: 57; E-Value: 5e-24

Query Start/End: Original strand, 24 - 116

Target Start/End: Original strand, 241234 - 241326

Alignment:

Q	24	tttggtcaaagtctcgttatttaacacacaaaaaatatatgtttataattaagtttgcaagtgtttctaactgcaatccatatatcagaacaa	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	241234	tttggtcaaagtctcgttatttaatacacaaatggtatatttttataattaagtttgcaagtgttcctaagtgcaattcatatataagaacaa	241326	T

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Target: scaffold0008; HSP #3

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 121 - 165

Target Start/End: Original strand, 267268 - 267312

Alignment:

Q	121	atgttataaatttacgaaaattttatggtgaagtcatgaaaatta	165	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	267268	atgttataaatttaggaaaattctatggtgaagtcatgaaaatta	267312	T

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