View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13710_low_2 (Length: 373)
Name: NF13710_low_2
Description: NF13710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13710_low_2 |
 | |
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| [»] scaffold0096 (1 HSPs) |
| | |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 31770270 - 31770600
Alignment:
| Q |
18 |
cttaccaaaggaaagctctaacgtagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770270 |
cttaccaaaggaaagctctaacgtagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgaga |
31770369 |
T |
|
| Q |
118 |
gaaaaagaaaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagagagtgagtacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
31770370 |
gaaaaagaaaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagagagtgagtacc |
31770469 |
T |
|
| Q |
218 |
taaaactaatgcaaagtattcaatctgaaccatcgtactccaatcctcacactctgatacttacaatttcaccgaattccaattgaatatcaccaattta |
317 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770470 |
taaaactgatgcaaaatattcaatctgaaccatcgtactccaatcctcacactctgatacttacaatttcaccgaattccaattgaatatcaccaattta |
31770569 |
T |
|
| Q |
318 |
ctctagaaagttattcagaaattaaaatcct |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
31770570 |
ctctagaaagttattcagaaattaaaatcct |
31770600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 7607710 - 7607899
Alignment:
| Q |
18 |
cttaccaaaggaaagctctaacgtagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgaga |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7607710 |
cttaccaaaggaaagctctaacgtagaatctattttgatagaaccatctagtaagataaattatgacctaatagaagaggtattgaagattcaattgaga |
7607809 |
T |
|
| Q |
118 |
gaaaaagaaaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagag |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7607810 |
gaaaaagaaaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagag |
7607899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 14185082 - 14184934
Alignment:
| Q |
18 |
cttaccaaaggaaagctctaacgtagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14185082 |
cttaccaaaggaaagctctaacgtagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgaga |
14184983 |
T |
|
| Q |
118 |
gaaaaagaaaaatgttttgcaaagataaagtggtggtagagatttctaa |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14184982 |
gaaaaagaaaaatgttttgcaaagataaagtggtggtagagatttctaa |
14184934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 123 - 348
Target Start/End: Complemental strand, 41810939 - 41810714
Alignment:
| Q |
123 |
agaaaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagagagtgagtacctaaaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41810939 |
agaaaaatgttttgcaaagataaagtggtgttagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagagagtgagtacctaaaa |
41810840 |
T |
|
| Q |
223 |
ctaatgcaaagtattcaatctgaaccatcgtactccaatcctcacactctgatacttacaatttcaccgaattccaattgaatatcaccaatttactcta |
322 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41810839 |
ctgatgcaaaatattcaatctgaaccatcgtactccaatcctcacactctgatacttacaatttcaccgaattccaattgaatatcaccaatttactcta |
41810740 |
T |
|
| Q |
323 |
gaaagttattcagaaattaaaatcct |
348 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41810739 |
gaaagttattcagaaattaaaatcct |
41810714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 41 - 348
Target Start/End: Complemental strand, 28734 - 28420
Alignment:
| Q |
41 |
tagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaa |
140 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28734 |
tagaatccattttgatagaaccatcaagtaagatagattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaa-tgttttgcaaa |
28636 |
T |
|
| Q |
141 |
gataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagagagtgagtacctaaaactaatgcaaagtattcaa |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||| ||||| | |
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|
| T |
28635 |
gataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagagagggagtacctaaaactgatacaaaatattcca |
28536 |
T |
|
| Q |
241 |
tctgaaccatcgtactccaatcctcaca--------ctctgatacttacaatttcaccgaattccaattg-aatatcaccaatttactctagaaagttat |
331 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||| ||||| ||||||| ||| |||||||||||| ||||||||||||||||| ||||||| ||| |
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| T |
28535 |
tctgaaccat-gtactccaatccttacactccgaatctccgatacatacaattacacagaattccaattgaaatatcaccaatttactttagaaagctat |
28437 |
T |
|
| Q |
332 |
tcagaaattaaaatcct |
348 |
Q |
| |
|
|||||||||||||| |
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|
| T |
28436 |
catgaaattaaaatcct |
28420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 41 - 348
Target Start/End: Original strand, 12537848 - 12538162
Alignment:
| Q |
41 |
tagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaa |
140 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12537848 |
tagaatccattttgatagaaccatcaagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaa-aaaaatgttttgcaaa |
12537946 |
T |
|
| Q |
141 |
gataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagagagtgagtacctaaaactaatgcaaagtattcaa |
240 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||| ||||| | |
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|
| T |
12537947 |
gataaagttgtggtggagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagagatggagtacctaaaactgatacaaaatattcca |
12538046 |
T |
|
| Q |
241 |
tctgaaccatcgtactccaatcctcaca--------ctctgatacttacaatttcaccgaattccaattg-aatatcaccaatttactctagaaagttat |
331 |
Q |
| |
|
||| |||||| ||||||||||||| ||| ||| |||||||||||||||||||| || |||||| |||||||||| |||||| ||||||| ||| |
|
|
| T |
12538047 |
tctaaaccat-gtactccaatccttacactccgaatctccgatacttacaatttcaccgatttacaattgaaatatcaccagtttactttagaaagctat |
12538145 |
T |
|
| Q |
332 |
tcagaaattaaaatcct |
348 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12538146 |
catgaaattaaaatcct |
12538162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 268
Target Start/End: Complemental strand, 12870861 - 12870619
Alignment:
| Q |
25 |
aaggaaagctctaacgtagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaag |
124 |
Q |
| |
|
||||||||||| || ||||||| | ||| |||||||| | ||||||||||||| |||||||| ||| | | |||||||||||||||||||||||| | |
|
|
| T |
12870861 |
aaggaaagctcgaatatagaatcaaagttgttagaaccaccgagtaagataaattatgacctaacagataaagaattgaagattcaattgagagaaaa-g |
12870763 |
T |
|
| Q |
125 |
aaaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagagagtgagtacctaaaact |
224 |
Q |
| |
|
||| ||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | |||||||||| | |
|
|
| T |
12870762 |
aaagatgatttgcaaatataaagtagtggtagagatttctaaaccctaacaaattgatagaaattagagaaaaatagtgagagaaggggtacctaaaatt |
12870663 |
T |
|
| Q |
225 |
aatgcaaagtattcaatctgaaccatcgtactccaatcctcaca |
268 |
Q |
| |
|
|| ||| |||| ||| ||| |||||||||||||||||||| |
|
|
| T |
12870662 |
gattcaagaaattccatcccaacaatcgtactccaatcctcaca |
12870619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 52 - 268
Target Start/End: Complemental strand, 27765998 - 27765782
Alignment:
| Q |
52 |
ttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaagataaagtggt |
151 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||||||| ||| || | |||||||||||||||||||||||| |||| ||| |||||||| ||||||| || |
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|
| T |
27765998 |
ttgatagaaccaccgagtaagataaattatgacctaacagatgaagaattgaagattcaattgagagaaaa-gaaagatgatttgcaaatataaagtagt |
27765900 |
T |
|
| Q |
152 |
ggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagag-agtgagtacctaaaactaatgcaaagtattcaatctgaaccat |
250 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| || | |||||||||| | || ||| |||| ||| |||||| |
|
|
| T |
27765899 |
agtagagatttccaaaccctaacaaattgatagaaattagagaaaaatagtgagagaagggggtacctaaaattgattcaagaaattccatcccaaccat |
27765800 |
T |
|
| Q |
251 |
cgtactccaatcctcaca |
268 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
27765799 |
cgtacttcaatcctcaca |
27765782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 32280001 - 32279926
Alignment:
| Q |
41 |
tagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgag |
116 |
Q |
| |
|
||||||| | |||||||||||||| ||||||| ||||| ||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
32280001 |
tagaatccaatttgatagaaccattgagtaagaaaaattatgacctaatagaagaggaatttaaaattcaattgag |
32279926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 35947 - 36022
Alignment:
| Q |
41 |
tagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgag |
116 |
Q |
| |
|
||||||| | |||||||||| ||| ||||||| ||||| ||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
35947 |
tagaatccaatttgatagaaacattgagtaagaaaaattatgacctaatagaagaggaattcaaaattcaattgag |
36022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 6666712 - 6666779
Alignment:
| Q |
126 |
aaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagag |
193 |
Q |
| |
|
|||||| || ||||||||||| |||| |||||||||| |||||| ||| |||||||||||||| |||| |
|
|
| T |
6666712 |
aaaatggttggcaaagataaattggtagtagagatttgtaaaccctaataaattgatagaaatgagag |
6666779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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