View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13710_low_4 (Length: 283)
Name: NF13710_low_4
Description: NF13710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13710_low_4 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 31770862 - 31770615
Alignment:
| Q |
4 |
tcaaatgagaagtattgtagatatattgctttcctaccatgctttgacgggtatgagtctcccannnnnnngttgctgttatttctgtactgtatatctt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
31770862 |
tcaaatgagaagtattgtagatatattgctttcctaccatgctttgacgggtatgagtctcccatttttttgttgctgtaatttctgtactgtatatctt |
31770763 |
T |
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| Q |
104 |
cctgatgttgnnnnnnnnnnnnnnncttaccagcaccttcgatacaaggttcgctccatccatttcttcttcgcattgaacttttccgatttcgttgcca |
203 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770762 |
cctgatgttgtttttttggttttttcttaccagcaccttcgatacaaggttcgctccatccatttcttcttcgcattgaacttttccgatttcgttgcca |
31770663 |
T |
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| Q |
204 |
ttgaagtcttcgtaacggtggaaccttgatgtttttggtattgcgttg |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770662 |
ttgaagtcttcgtaacggtggaaccttgatgtttttggtattgcgttg |
31770615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 41810453 - 41810700
Alignment:
| Q |
4 |
tcaaatgagaagtattgtagatatattgctttcctaccatgctttgacgggtatgagtctcccannnnnnngttgctgttatttctgtactgtatatctt |
103 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
41810453 |
tcaaatgagaagtattgtagatatattgctttactaccatgctttgacgggtatgagtctcccatttttttgttgctgtaatttctgtactgtatatctt |
41810552 |
T |
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| Q |
104 |
cctgatgttgnnnnnnnnnnnnnnncttaccagcaccttcgatacaaggttcgctccatccatttcttcttcgcattgaacttttccgatttcgttgcca |
203 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41810553 |
cctgatgttgtttttttggttttttcttaccagcaccttcgatacaaggttcgctccatccatttcttcttcgcattgaacttttccgatttcgttgcca |
41810652 |
T |
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| Q |
204 |
ttgaagtcttcgtaacggtggaaccttgatgtttttggtattgcgttg |
251 |
Q |
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| T |
41810653 |
ttgaagtcttcgtaacggtggaaccttgatgtttttggtattgcgttg |
41810700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 16253157 - 16253096
Alignment:
| Q |
140 |
cttcgatacaaggttcgctccatccatttcttcttcgcattgaacttttccgatttcgttgc |
201 |
Q |
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| T |
16253157 |
cttcgattcaaggttcgctccatccatttcttcaccgcattgcacttttccgatttcgttgc |
16253096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 28298 - 28406
Alignment:
| Q |
140 |
cttcgatacaaggttcgctccatccatttcttcttcgcattgaacttttccgatttcgttgccattgaagtcttcgtaacggtggaaccttgatgttttt |
239 |
Q |
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||||||| ||||||||||||||||||||| | |||||| ||||||||||||| ||||| | ||| | |||||||| || ||| |||||| |||| |
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| T |
28298 |
cttcgatttaaggttcgctccatccatttcgtt---gcattgcacttttccgattttgttgcaaacgaaattttcgtaactgtagaatcttgatattttg |
28394 |
T |
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| Q |
240 |
ggtattgcgttg |
251 |
Q |
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|| ||||||||| |
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| T |
28395 |
ggcattgcgttg |
28406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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