View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_high_1 (Length: 636)
Name: NF13711_high_1
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_1 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 186 - 564
Target Start/End: Original strand, 3163156 - 3163530
Alignment:
| Q |
186 |
aataatatgcaagaaaccactagacttcaattctcagatttctacttattggttaaaaggtttatttgcatttacttacttatggtgtgagcatttactg |
285 |
Q |
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| T |
3163156 |
aataatatgcaagaaaccactggacttcaattctcagatttgtacttattggttaaagggtttatttgcatttacttacttatgatgcgagcatttactg |
3163255 |
T |
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| Q |
286 |
gttgagaat-tttaaaaggttatatgtattcattggtctgtttaacaattgaaagatgcaaaggaaactaatcctattatttgaaactgtaaaatgtgca |
384 |
Q |
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| T |
3163256 |
gttgagaatatttcaaaggttatatgtattccttagtctgtttaacaattcaaagatgcaaaggaaactaatcctcttatttgaaactgtaaaatgtaca |
3163355 |
T |
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| Q |
385 |
ctcttctttcagtaaggagatacaaaagaaataaaccagtggctgtttttccatttgtgttcaacaaaatacatgggaaaatagttatattaaactgttt |
484 |
Q |
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| T |
3163356 |
ctcttctttcagtaatgagatacaaaaaaaaaa----agtggctgtttttccatttgtgatcaacaaaatacatggcaaagtagttatattgaattgttt |
3163451 |
T |
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| Q |
485 |
ttaaacaaagtgaatcacac-agaagaaaccattaaaattttaaaatgtaagaccatatagataacaatgtacaaaaactt |
564 |
Q |
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| T |
3163452 |
ttgaacaatttgaatcacacaagaataaaccaatacaattttaaaatgtaaggcc--atagataacaatgttcaacaactt |
3163530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 3162976 - 3163101
Alignment:
| Q |
3 |
cgagttattctttctttttctggtgatttactatcgagtctaattaactaagaacaacctcaaggatttaccataataaatgagtgattatatgtcgtca |
102 |
Q |
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| T |
3162976 |
cgagtttttgtttctttttctagtgatttactttgaagtctaattaactaagaacaacctcatggatttaccacaataaatgagtgattatatgttgcca |
3163075 |
T |
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| Q |
103 |
acgtgatataatttaaattttccttt |
128 |
Q |
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| T |
3163076 |
acatgatataattttaattttccttt |
3163101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 621
Target Start/End: Original strand, 3166762 - 3166794
Alignment:
| Q |
589 |
ccaatgcataaactatttggagatacagcacag |
621 |
Q |
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| T |
3166762 |
ccaatgcataaactatttggagatacagcacag |
3166794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 35085 - 35037
Alignment:
| Q |
236 |
ggttaaaaggtttatttgcatttacttacttatggtgtgagcatttact |
284 |
Q |
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| T |
35085 |
ggttaaaaggtctatttgcatttacttacttatggtgtgagcatttact |
35037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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