View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13711_high_15 (Length: 341)
Name: NF13711_high_15
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 14179098 - 14179405
Alignment:
| Q |
17 |
agttattggtctctttcattcgatcaaactaaggttgaccaacttgagtgtgttagtctcttagacaaggacagttagtttatttttcagatgatgatgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14179098 |
agttattggtctctttcattcgatcaaactaaggttgaccaacttgagtgtgttagtctcttagacaaggacagttagtttatttttcagatgatgatgc |
14179197 |
T |
|
| Q |
117 |
aagctgatattacaaatatgtatatgatgatttcatgttataattcgtttttcagacagcatgtgctggagattatgcatttcactttcaacgatatata |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14179198 |
aagctgatattacaaatatgtatatgatgatttcatgttataattcgtttttcagacagcatgtgctggagattatgcatttcactttcaacgatatatt |
14179297 |
T |
|
| Q |
217 |
tatgtagatagataatgaatatgaatacaatttcagctttgctataaagatttttatagggctacatcttataaaatcaaattacagctgtctcttgctg |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14179298 |
tatgtagataaataatgaatatgaatacaatttcagctttgctataaagatttttatagggctacatcttataaaatcaaattacagctgtctcttgctg |
14179397 |
T |
|
| Q |
317 |
cttcaatt |
324 |
Q |
| |
|
|||||||| |
|
|
| T |
14179398 |
cttcaatt |
14179405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University