View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13711_high_16 (Length: 338)
Name: NF13711_high_16
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 35430618 - 35430932
Alignment:
| Q |
7 |
gatatatctatattctctgcagttataatgaatgttatttacaacaatgaaattgtttgtctagcgtagcattaattcctacgggctacaaaattttggt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35430618 |
gatatatctatattctctgcagttataatgaatgttatttacaacaatgaaattgtttgtctagcgtagcattaattcctac-------aaaattttggt |
35430710 |
T |
|
| Q |
107 |
ctgcaaggtgcagtaagggttctctattagattagttggtcggtgcttttgataattctttacatgttcattaaatttctttgacgtacgttctttagtt |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35430711 |
ctgcaaggtgcagtaagggttct--attagattagttggtcggtgcttctggtaattctttacatgttcattaaatttctttgacgtacgttctttagtt |
35430808 |
T |
|
| Q |
207 |
tttatgtatgtcattctttagcatgaattgttttaactaaaacactgctatttagaagattggaattttcagtttgttcatttaaatttttgctctcttg |
306 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35430809 |
tttatgtatgtcattcgttagcatgaattgttttaactaaaacactgctatttagaagattggaattttcagtttgttcaattaaatttttgctctcttg |
35430908 |
T |
|
| Q |
307 |
aacttttccaaattttcctttgctt |
331 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
35430909 |
aac-tttccaaattttcctttgctt |
35430932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 30426416 - 30426340
Alignment:
| Q |
252 |
tgctatttagaagattggaattttcagtttgttcatttaaa-tttttgctctcttgaacttttccaaattttccttt |
327 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| ||||||| |||| |||| |||| ||||| | ||||||||||| |
|
|
| T |
30426416 |
tgctatttagaagatttgaattttcaatttgtttatttaaagttttggctccattgacctttttccaattttccttt |
30426340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University