View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_high_18 (Length: 334)
Name: NF13711_high_18
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 125 - 314
Target Start/End: Original strand, 40284572 - 40284760
Alignment:
| Q |
125 |
tatcaagtgtccagagatactgatccagatcaagaattcaagatcaaaccaaacaaacaaattctaaaaacaaaagggatgcacagaaaatataatgaat |
224 |
Q |
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| T |
40284572 |
tatcaagtgtccagagatactgatccagatcaagaattca-gatcaaaccaaacaaacaaattctaaaaacaaaagggatgcacagaaaatataatgaat |
40284670 |
T |
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| Q |
225 |
ttgtagtactctatgaaaggaacggtgagtttggttggagctgtttgcataaaccaagataagatgaatatatcaatctatctttggcac |
314 |
Q |
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| T |
40284671 |
ttgtagtactctatggaaggaaggatttgtttggttggagttgtttgcataaaccaaaataagttgaataaatcaatctatttttggcac |
40284760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 40279707 - 40279799
Alignment:
| Q |
222 |
aatttgtagtactctatgaaaggaacggtgagtttggttggagctgtttgcataaaccaagataagatgaatatatcaatctatctttggcac |
314 |
Q |
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| T |
40279707 |
aatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataagttgaataaatcaatctatttttggcac |
40279799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 40458643 - 40458551
Alignment:
| Q |
222 |
aatttgtagtactctatgaaaggaacggtgagtttggttggagctgtttgcataaaccaagataagatgaatatatcaatctatctttggcac |
314 |
Q |
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| T |
40458643 |
aatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataagttgaataaatcaatctatttttggcac |
40458551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 40284504 - 40284542
Alignment:
| Q |
18 |
attagaataaaaatggatacgagcacgcatgaaagaatt |
56 |
Q |
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| T |
40284504 |
attaaaataaaaatggacacgagcacgcatgaaagaatt |
40284542 |
T |
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