View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_high_20 (Length: 319)
Name: NF13711_high_20
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 33787417 - 33787712
Alignment:
| Q |
20 |
gatgattttctttataaactttggtcatactttgtagaaatagaatatggatatataacttataaaaatgaattaaaacctgttctactaagctaggcat |
119 |
Q |
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| T |
33787417 |
gatgattttctttataaactttggtcatactttgtagaaatagaatatagatatataacttataaaaatgaattaaaacctgttctactaagctaggcat |
33787516 |
T |
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| Q |
120 |
tacagattaactctacatataaactggacgcgttttaaactgatacaatatggtttaacagtccacatagat----tgatttggaacgttaaaaatcatc |
215 |
Q |
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| T |
33787517 |
tacagat-aactctacatataaactggacgcgttttaaactgatacaatatggtttaaccgtccacatagatcgattgatttggaacgttaaaaatcatc |
33787615 |
T |
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| Q |
216 |
atttgtagtcaaaacgcgtcttccacaattaatcttctttctgtcaccaacaatttcatgcaagcaccgtcctttttaaaacttcaaagaattatct |
312 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33787616 |
atttgtagtcaaaacgcatcttccacaattaatcttctttttgtcaccaacaatttcatgcaagcaccgtcctttttaaaacgtcaaagaattatct |
33787712 |
T |
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