View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13711_high_22 (Length: 312)
Name: NF13711_high_22
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 38028411 - 38028132
Alignment:
| Q |
20 |
atcagttatcaaacggaaagcatataggatccccatgttgttgaattctacatggtcctgacttgaatatattccaattgcaatcatcgcaattactttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38028411 |
atcagttatcaaacggaaagcatataggatccccatgttgttgaattctacatggtcctgacttgaatatattccaattgcaatcatcgcaattactttt |
38028312 |
T |
|
| Q |
120 |
acgtaaattactggcatggtaaatattaaaactatgtgtctcaccattccatccaaaggagcaagggctgtcgaaaagaactttctcattgaaactgaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38028311 |
acgtaaattactggcatggtaaatattaaaactatgtgtctcaccattccatccaaaggagcaagggctgtcgaaaagaactttctcattgaaactgaaa |
38028212 |
T |
|
| Q |
220 |
ccatagttatcaccaggatgcagaggatggactccgaaatcatcatccatagttttgcaatgaacaattaagtccaaact |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38028211 |
ccatagttatcaccaggatgcagaggatggactccgaaatcatcatccatagttttgcaatgaacaattaagtccaaact |
38028132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 30459517 - 30459596
Alignment:
| Q |
35 |
gaaagcatataggatccccatgttgttgaattctacatggtcctgacttgaatatattccaattgcaatcatcgcaatta |
114 |
Q |
| |
|
||||||| ||||| |||||||||| |||| ||||||||||||||| || |||| |||||||||||||| ||| |||||| |
|
|
| T |
30459517 |
gaaagcaaatagggtccccatgttcctgaagtctacatggtcctgatttaaatacattccaattgcaataatcacaatta |
30459596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 30447986 - 30448035
Alignment:
| Q |
65 |
ttctacatggtcctgacttgaatatattccaattgcaatcatcgcaatta |
114 |
Q |
| |
|
|||||||||||||||| | ||||| |||||||||||||| ||| |||||| |
|
|
| T |
30447986 |
ttctacatggtcctgattcgaatacattccaattgcaataatcacaatta |
30448035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University