View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_high_24 (Length: 283)
Name: NF13711_high_24
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_24 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 6133606 - 6133332
Alignment:
| Q |
9 |
cattatactcttcgccaaataagaaattgtgtgacagcacaagaggcttggaatcacttaaaagctgtttttagcgaagatttaagagcagacaaatctt |
108 |
Q |
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| T |
6133606 |
cattatactcttcgccaaataagaaattgtgtgacagcacaagaggcttggaatcacttaaaagctgtttttagcgaagatttaagagcagacaaatctt |
6133507 |
T |
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| Q |
109 |
acaatgatattgagcaaggaggtcttcaaagtgatattgacaagtttcatgtagcagtgaagaaaggcatgtggaatgacgcgattttgtttatcaggaa |
208 |
Q |
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| T |
6133506 |
acaatgatattgagcaaggaggtcttcaaagtgatattgacaagtttcatgtagcagtgaagaaaggcatgtggaatgacgcgattttgtttatcaggaa |
6133407 |
T |
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| Q |
209 |
tgacggagatattatttcgcaaaagtcatcctctaatggttggacttctcttcacgttgcagttgatgcaggaca |
283 |
Q |
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| T |
6133406 |
tgacggagatattatttcgcaaaagtcaccctctaatggttggacttctcttcacgttgcagttgatgcaggaca |
6133332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 6866322 - 6866057
Alignment:
| Q |
9 |
cattatactcttcgccaaataagaaattgtgtgacagcacaagaggcttggaatcacttaaaagctgtttttagcgaagatttaagagcagacaaatctt |
108 |
Q |
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| T |
6866322 |
cattatactcttggccagataagaaattgtgtaacagcacaagaggcctggaatcggttaaaggccgcttttagcgaaaatttaaatgcagaccaa---- |
6866227 |
T |
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| Q |
109 |
acaatgatattgagcaaggaggtcttcaaagtgatattgacaagtttcatgtagcagtgaagaaaggcatgtggaatgacgcgattttgtttatcaggaa |
208 |
Q |
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| T |
6866226 |
-----gatattgagcaaggaggtcttcaaactgacattgacaagtttcatgtggcactgaagaaaggcatgtggaatgatgcaattctgtttatcagcca |
6866132 |
T |
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| Q |
209 |
tgacggagatattatttcgcaaaagtcatcctctaatggttggacttctcttcacgttgcagttgatgcaggaca |
283 |
Q |
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| T |
6866131 |
agatggagatattatttctcaaaagtcgtcctcgaaaggctggacttctcttcatgttgcagttgatgcaggaca |
6866057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 112 - 283
Target Start/End: Original strand, 6088167 - 6088338
Alignment:
| Q |
112 |
atgatattgagcaaggaggtcttcaaagtgatattgacaagtttcatgtagcagtgaagaaaggcatgtggaatgacgcgattttgtttatcaggaatga |
211 |
Q |
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| T |
6088167 |
atgatattgagcaaggaggtcttcaaactgacattgacatgtttcatgtggcagtgaagaaaggcatgtggaacgacgcaattttcttcatcagacgtga |
6088266 |
T |
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| Q |
212 |
cggagatattatttcgcaaaagtcatcctctaatggttggacttctcttcacgttgcagttgatgcaggaca |
283 |
Q |
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| T |
6088267 |
tggagatattatttcacaaaagtcatcctttaatggttggacttctcttcacgttgcagttgatgctggaca |
6088338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 6088040 - 6088132
Alignment:
| Q |
9 |
cattatactcttcgccaaataagaaattgtgtgacagcacaagaggcttggaatcacttaaaagctgtttttagcgaagatttaagagcagac |
101 |
Q |
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| T |
6088040 |
cattataatcttcgccaaataagaaattgtgtaacagcacaagaggcttggaatcacttaaaagttgccttcagcgaagatttaagagcagac |
6088132 |
T |
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