View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_high_25 (Length: 276)
Name: NF13711_high_25
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 52263041 - 52263289
Alignment:
| Q |
16 |
tgtggataaacccaaaccaaatcgttctgaaacaagcctataaggatcacctgtggcaagtctccaaatacaagccgccactcgctgccggagaggaaca |
115 |
Q |
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| T |
52263041 |
tgtggataaacccaaaccaaatcgttctgaaacaagcctataaggatcacctgtggcaagtctccaaatacaagccgctactcgctgccggagaggaata |
52263140 |
T |
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| Q |
116 |
gcgtcgcggagcgtcgtgtttttcttggtgactgttgaatcaagttctctgcatataaactcaaaggtttctttgctcatccgaaaagatttctggaatt |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52263141 |
gcgtcgcggagcgtcgtgtttttcttggtgacagttgaatcaagttctctgcatataaactcaaaggtttatttgctcatccgaaaagatttctggaatt |
52263240 |
T |
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| Q |
216 |
cgtcatccggaaaatcagggtggctac--atagttcccaccagttattg |
262 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52263241 |
cgtcatccggaaaatcagggtggctacatatagttcccaccagttattg |
52263289 |
T |
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