View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_high_27 (Length: 265)
Name: NF13711_high_27
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 6133355 - 6133128
Alignment:
| Q |
15 |
tcacgttgcagttgatgcaggacaagataaaatcatgcaggagttggttgaaatgggggcattgctgacagagaaagactgggagggatacacaccgttt |
114 |
Q |
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| T |
6133355 |
tcacgttgcagttgatgcaggacaagataaaatcatgcagaagttggttgaaatgggggcattgctgacagagaaagactgggagggatacacaccgttt |
6133256 |
T |
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| Q |
115 |
gctctcgctgctaaatcaacagatgatacagaaatggttaagtggatgcttgctaagggaggaaatgatctactgacaatgaaaataaaagctgatgatg |
214 |
Q |
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| T |
6133255 |
gctctcgctgctaaatcaacagatgatacaaaaatggttaagtggatgcttgctaagggaggaaatgatctactgacaatgaaaataaaagctgatgatg |
6133156 |
T |
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| Q |
215 |
gtaaaggtgacattccagtacttcttgc |
242 |
Q |
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| T |
6133155 |
gtaaaggtgacattccagtacttcttgc |
6133128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 6866076 - 6865856
Alignment:
| Q |
19 |
gttgcagttgatgcaggacaagataaaatcatgcaggagttggttgaaatgggggcattgctgacagagaaagactgggagggatacacaccgtttgctc |
118 |
Q |
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| T |
6866076 |
gttgcagttgatgcaggacaagataaaatcatgaaggagttggttgaaatgggggcattgctgacagaggaagattgggagggctacacaccttttgctc |
6865977 |
T |
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| Q |
119 |
tcgctgctaaatcaacagatgatacagaaatggttaagtggatgcttgctaagggaggaaatgatctactgacaatgaaaataaaagctgatgatggtaa |
218 |
Q |
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| T |
6865976 |
ttgctgttaaatcaaccgacgatattaaaattgtcgagtggatgcttaacaaaggaggaaatgatctactaaccatgaaaatcaaagctgatgacgataa |
6865877 |
T |
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| Q |
219 |
aggtgacattccagtacttct |
239 |
Q |
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| T |
6865876 |
gggtgacattccagtacttct |
6865856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 6088315 - 6088539
Alignment:
| Q |
15 |
tcacgttgcagttgatgcaggacaagataaaatcatgcaggagttggttgaaatgggggcattgctgacagagaaagactgggagggatacacaccgttt |
114 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||| ||||||||||||||||| ||| |
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| T |
6088315 |
tcacgttgcagttgatgctggacaagataaaatcatgaaggagttggttaaaatgggggcattgttgacagagagagattgggagggatacacacccttt |
6088414 |
T |
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| Q |
115 |
gctctcgctgctaaatcaacagatgatacagaaatggttaagtggatgcttgctaagggaggaaatgatctactgacaatgaaaataaaagctgatgatg |
214 |
Q |
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| T |
6088415 |
gctcttgctgttaaatcaactaatgatatacaaattgttgagtggatgcttaataaaggaggagctgatcttctaaccatgaaaatcaaagctaatgata |
6088514 |
T |
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| Q |
215 |
gtaaaggtgacattccagtacttct |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
6088515 |
ataaaggtgacattccagtacttct |
6088539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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