View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_high_28 (Length: 254)
Name: NF13711_high_28
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 43200169 - 43200409
Alignment:
| Q |
1 |
taagacaatataaccaaaata---ataataataattaatgacatgcatcagggtgataacaacaaacaaaatccagcatcaatactctcattttctgtac |
97 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43200169 |
taagacaatataaccaaaataataataataataattaatgacatgcatcagggtgataacaacaaacaaaatccagcatcaatactctcattttctgtac |
43200268 |
T |
|
| Q |
98 |
ttaattcatccttaattgattgatgacaaatggaataattataataatttatagtgagcagtaaaaattaaccaaaataggaaatattatcatcacttga |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43200269 |
ttaattcatccttaattgattgatgacaaatggaataataataataatttatagtgagcagtaaaaattaaccaaaataggaaatattatcatcacttga |
43200368 |
T |
|
| Q |
198 |
aattgtattatagttgggatccctctgttgaaagtatatgg |
238 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
43200369 |
aattgtattatagttgggatccctctgttgaaagtatatgg |
43200409 |
T |
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