View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_high_31 (Length: 237)
Name: NF13711_high_31
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43259447 - 43259226
Alignment:
| Q |
1 |
taaagtatatctctcatattatcaacttattatcttacgttcataattacatttctaatgataaaaaactatagaaatctttgatatgttagagatgctg |
100 |
Q |
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| T |
43259447 |
taaagtatatctctcatattatcaacttattatcttacgttcataattacatttctaatgataaaaaactatagaaatctttgatatgttagagatgctg |
43259348 |
T |
|
| Q |
101 |
attgaaatctgtaattttccatcttttaacacttagctcttcaaaaatcaacctgcaaaacccacctttagtgtgtgtgattctcgttgccggcctctta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43259347 |
attgaaatctgtaattttccatcttttaacacttagctcttcaaaaatcaacctgcaaaacacacctttagtgtgtgtgattctcgttgccggcctctta |
43259248 |
T |
|
| Q |
201 |
ttaaacttaaaagaagaaatat |
222 |
Q |
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||||||||||||||||||||| |
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| T |
43259247 |
ataaacttaaaagaagaaatat |
43259226 |
T |
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