View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_high_32 (Length: 237)
Name: NF13711_high_32
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_32 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 27268622 - 27268387
Alignment:
| Q |
16 |
aaaaggagtgcttcttgtgctgcctgaacgttctctatgcggcctccccatgtcttcaatgcggtgttctggagagctct--------------acacgt |
101 |
Q |
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| T |
27268622 |
aaaaggagtgcttcttgtgctgcctgaacgttctctatgcggcctccccatgtcttcaatgcggtgttctggagagctcttgcatatgagaatgacacgt |
27268523 |
T |
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| Q |
102 |
gccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaactacataacaaaatacaatataca |
201 |
Q |
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| T |
27268522 |
gccatgggtttggagattggttcatggcattcaagttgagcgttgcttcaacctcagattgtccaccagacaaaaactacataacaaaatacaatataca |
27268423 |
T |
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| Q |
202 |
actttggtcagcatatgaacgtgttagtatcgtgcc |
237 |
Q |
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| T |
27268422 |
actttggtcagcatatgaacgtgttagtatcgtgcc |
27268387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 21196039 - 21195861
Alignment:
| Q |
16 |
aaaaggagtgcttcttgtgctgcctgaacgttctctatgcggcctccccatgtcttcaatgcggtgttctggagagctct--------------acacgt |
101 |
Q |
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| T |
21196039 |
aaaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgt |
21195940 |
T |
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| Q |
102 |
gccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaacta |
180 |
Q |
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| T |
21195939 |
gccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaacta |
21195861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 27251788 - 27251610
Alignment:
| Q |
16 |
aaaaggagtgcttcttgtgctgcctgaacgttctctatgcggcctccccatgtcttcaatgcggtgttctggagagctct--------------acacgt |
101 |
Q |
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| T |
27251788 |
aaaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgt |
27251689 |
T |
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| Q |
102 |
gccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaacta |
180 |
Q |
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| T |
27251688 |
gccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaacta |
27251610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 49364014 - 49364097
Alignment:
| Q |
96 |
acacgtgccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaact |
179 |
Q |
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| T |
49364014 |
acacatgccatgggttgggactttggttcatagcattaagatttagagttgcttcaacttctgattgtccacctgacaaaaact |
49364097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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