View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_high_4 (Length: 532)
Name: NF13711_high_4
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 77 - 353
Target Start/End: Original strand, 31363014 - 31363292
Alignment:
| Q |
77 |
atatatacacatatagcaggtatttttaatttaagtggcaagagcaagtcctcaatgcatgtaaaaacacttatcggtaagagtgacacctctcatttta |
176 |
Q |
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| T |
31363014 |
atatatatatatatagcatgtatttttaatttaagtggcaagagcaagtcctcaatgcatgtaaaaacacttatcggtaagagtgacacctctcggttta |
31363113 |
T |
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| Q |
177 |
cggacgagttagacccaatataaaaacctaacaaatgtgatcgtgtattcttaactcattttaagatgatagcagcaacagttttagaatgttaaatgat |
276 |
Q |
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| T |
31363114 |
cggatgagttggacacgatataaaaacataacaaatgtgattgtgtattcttaattcattttaagatgagagcaacaacagttttagaaagttaaatgat |
31363213 |
T |
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| Q |
277 |
gaatcaccaagaaattgatgtcacaag--tatgggccagtgatgtttaaaggatgaaaatgacataggaaagaattaga |
353 |
Q |
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| T |
31363214 |
gaatcacgcagaaattgatgtcacaagtatatgggccagtgatgtttaaaggatgaaaatgacataggaaagacttaga |
31363292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31362900 - 31362985
Alignment:
| Q |
1 |
agaatgagtgaaaggaagaaacatcgagtggatgtggccatcttatcttaaaactattaac----aagagagaagttcagatatat |
82 |
Q |
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| T |
31362900 |
agaatgagtgaaaggaagaaacattgagtggatgtggccatcttatcttaaaattattaacaaggaagagagaagttcagatatat |
31362985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31295336 - 31295394
Alignment:
| Q |
1 |
agaatgagtgaaaggaagaaacatcgagtggatgtggccatcttatcttaaaactatta |
59 |
Q |
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| T |
31295336 |
agaatgaatgaaaggaagaaaaattgagtggatctagccatcttatcttaaaattatta |
31295394 |
T |
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