View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13711_high_5 (Length: 508)
Name: NF13711_high_5
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 11 - 490
Target Start/End: Original strand, 7699183 - 7699662
Alignment:
| Q |
11 |
cacagagctggttaaaactaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagcgccggataacttgttgttagacaaatcaac |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7699183 |
cacagagctggttaaagctaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagtgccggataacttgttgttagacaaatcaac |
7699282 |
T |
|
| Q |
111 |
ctcctttaggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctgaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7699283 |
ctcctttaggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctaaaa |
7699382 |
T |
|
| Q |
211 |
gagttagggattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagtgtaccggaaagac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
7699383 |
gagttagggattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagcgtaccggaaagac |
7699482 |
T |
|
| Q |
311 |
cccagccacggctgatggtgacgacggtgacacggccaggataaggtctgccgcaaccgacgaagttccagtcacaacattctgtattgttgtcccaatc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| || |
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|
| T |
7699483 |
cccagccacggctgatggtgacgacggtgactcggccaggataaggtctgccgcaaccgacgaagctccagtcacaacattcggtgttgttgtcccagtc |
7699582 |
T |
|
| Q |
411 |
gtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagt |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7699583 |
gtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagt |
7699662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 490
Target Start/End: Original strand, 7713528 - 7714007
Alignment:
| Q |
11 |
cacagagctggttaaaactaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagcgccggataacttgttgttagacaaatcaac |
110 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
7713528 |
cacagagctggttaaagctaacattgaactgcgaaagagactgtaggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaac |
7713627 |
T |
|
| Q |
111 |
ctcctttaggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctgaaa |
210 |
Q |
| |
|
||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
7713628 |
ctcttggaggcgcttcaacttgcccagaaattcagggattggcccactaaggctgttggagccaaggtcgagattttctagtcttttgagtttgctgaaa |
7713727 |
T |
|
| Q |
211 |
gagttagggattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagtgtaccggaaagac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7713728 |
gagttagggattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggtcgccaaactccgctggaagtgtaccggaaagac |
7713827 |
T |
|
| Q |
311 |
cccagccacggctgatggtgacgacggtgacacggccaggataaggtctgccgcaaccgacgaagttccagtcacaacattctgtattgttgtcccaatc |
410 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| || |
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|
| T |
7713828 |
cccagccacggccgatggtgacgccggtgactcggccaggataaggtctgccgcaacctacgaagttccagtcacaacattcagtgttgttgtcccagtc |
7713927 |
T |
|
| Q |
411 |
gtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagt |
490 |
Q |
| |
|
||| || ||||| || || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7713928 |
gtcaagacggccgttagggccgccaaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagt |
7714007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 488
Target Start/End: Original strand, 7731200 - 7731685
Alignment:
| Q |
6 |
agcagcacagagctggttaaaactaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagcgccggataacttgttgttagacaaa |
105 |
Q |
| |
|
|||| |||| || |||||||| || |||||||||||||||||||| ||| | ||||| |||||||||||| | |||||||||| ||||||||||||| |
|
|
| T |
7731200 |
agcaccacacagttggttaaagctgacattaaactgcgaaagagacggtatggagccgaacgacgccggaataacaccggataactggttgttagacaaa |
7731299 |
T |
|
| Q |
106 |
tcaacctcctttaggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgc |
205 |
Q |
| |
|
|||| ||||| || || |||||||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
7731300 |
tcaaactcctgtaagcccttcaactggcctagaaaagtggggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgc |
7731399 |
T |
|
| Q |
206 |
tgaaagagttagggattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagtgtaccgga |
305 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
7731400 |
taaaagagttagggattggcccagttactttcggcatttcggctaatgagaggaagttaagataagggaggtcgccaaactctactggaagcgtaccgga |
7731499 |
T |
|
| Q |
306 |
aagaccccagccacggctgatggtgacgacggtgacacggccaggataaggtctgccgcaaccgacgaagttccagtc---acaacattctgtattgttg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||| | || || ||||||||| ||||||| |||||| |||||| |||| |
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|
| T |
7731500 |
aagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggtttaccacacccgacgaagctccagtcgctacaacagtctgtaccgttg |
7731599 |
T |
|
| Q |
403 |
tcccaatcgtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaa |
488 |
Q |
| |
|
||||||||| |||||||| ||||| || |||||||||||||||||||||||||||| ||||||||| | |||||||||| |||| |
|
|
| T |
7731600 |
tcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgcaggagaa |
7731685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 488
Target Start/End: Original strand, 7727053 - 7727525
Alignment:
| Q |
19 |
tggttaaaactaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagcgccggataacttgttgttagacaaatcaacctccttta |
118 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||| | ||||| ||||| |||||| | |||||||||| ||||||||||||||||| ||||| || |
|
|
| T |
7727053 |
tggttaaagctgacattaaactgcgaaagagacggtatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgta |
7727152 |
T |
|
| Q |
119 |
ggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctgaaagagttagg |
218 |
Q |
| |
|
|| |||||||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7727153 |
agcccttcaactggcctagaaaagtggggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagg |
7727252 |
T |
|
| Q |
219 |
gattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagtgtaccggaaagaccccagcca |
318 |
Q |
| |
|
|||||| || |||||||| |||||||| ||||||||||| | | ||||||| ||||||| ||||||||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
7727253 |
gattggtccggttactttgggcatttcagccaatgagaggaagttaagatatgggaggtcgccaaactctgctggaagcgtaccagaaagaccccagcca |
7727352 |
T |
|
| Q |
319 |
cggctgatggtgacgacggtgacacggccaggataaggtctgccgcaaccgacgaagttccagtc---acaacattctgtattgttgtcccaatcgtcga |
415 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| |||| || ||||||||| ||||||| |||||| |||||| |||||||||||||| || |
|
|
| T |
7727353 |
cggctgatggtgacgacggtgattcggccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtactgttgtcccaatcggaga |
7727452 |
T |
|
| Q |
416 |
ggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaa |
488 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||||||||| | ||||||||| | ||| |||||| |||| |
|
|
| T |
7727453 |
ggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcattgcaggagaa |
7727525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 6 - 488
Target Start/End: Original strand, 7739358 - 7739843
Alignment:
| Q |
6 |
agcagcacagagctggttaaaactaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagcgccggataacttgttgttagacaaa |
105 |
Q |
| |
|
|||| |||| || |||||||| || || |||||||| |||||||| ||||| ||||| |||||||||||| | |||| |||||| |||||||||||| |
|
|
| T |
7739358 |
agcaccacacagttggttaaagctgacgttaaactgggaaagagacggtagggagccgaacgacgccggaataacaccggttaacttattgttagacaaa |
7739457 |
T |
|
| Q |
106 |
tcaacctcctttaggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgc |
205 |
Q |
| |
|
|||| ||||| || || |||||||| |||||| || | |||||| | ||||||||| ||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
7739458 |
tcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgc |
7739557 |
T |
|
| Q |
206 |
tgaaagagttagggattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagtgtaccgga |
305 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||| | | ||||||| || |||| ||||||||||||||| || |||||||| |
|
|
| T |
7739558 |
tgaaagagttaggaattggcccagttactttgggcatttcggccaatgagaggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccgga |
7739657 |
T |
|
| Q |
306 |
aagaccccagccacggctgatggtgacgacggtgacacggccaggataaggtctgccgcaaccgacgaagttccagtc---acaacattctgtattgttg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||| | || || ||||||||| ||||||| |||||| |||||| |||| |
|
|
| T |
7739658 |
aagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggtttaccacacccgacgaagctccagtcgctacaacagtctgtaccgttg |
7739757 |
T |
|
| Q |
403 |
tcccaatcgtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaa |
488 |
Q |
| |
|
||||||||| |||||||| ||||| || |||||||||||||||||||||||||||| ||||||||| | |||||||||| |||| |
|
|
| T |
7739758 |
tcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgcaggagaa |
7739843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 12908283 - 12908070
Alignment:
| Q |
19 |
tggttaaaactaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagcgccggataacttgttgttagacaaatcaacctccttta |
118 |
Q |
| |
|
|||||| | |||||||| ||||| || ||||| ||||| || |||| ||||| |||||| | |||||||||||||||||||||||||||||||| | || |
|
|
| T |
12908283 |
tggttagagctaacattcaactgggagagagacggtagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttcta |
12908184 |
T |
|
| Q |
119 |
ggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctgaaagagttagg |
218 |
Q |
| |
|
|||||||||| |||||| |||| |||||| || ||||||||| ||||||| ||| | || || | | | ||| ||||||||||||||||||||| |
|
|
| T |
12908183 |
agcgcttcaaccggcctaggaaggtggggatcgggccactaaggttgttggagttaagtttgaggcttcgcaattttttgagtttgctgaaagagttagg |
12908084 |
T |
|
| Q |
219 |
gattggcccagtta |
232 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12908083 |
gattggcccagtta |
12908070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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