View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13711_high_8 (Length: 425)

Name: NF13711_high_8
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13711_high_8
NF13711_high_8
[»] chr6 (9 HSPs)
chr6 (1-411)||(4474467-4474877)
chr6 (14-406)||(33804563-33804955)
chr6 (5-78)||(9565140-9565213)
chr6 (26-83)||(21676725-21676782)
chr6 (26-83)||(24749442-24749499)
chr6 (31-78)||(26010671-26010718)
chr6 (4-78)||(31297438-31297512)
chr6 (269-306)||(7617148-7617185)
chr6 (242-322)||(21548858-21548938)
[»] chr5 (7 HSPs)
chr5 (22-407)||(35122671-35123056)
chr5 (14-334)||(30510083-30510403)
chr5 (14-334)||(30550423-30550743)
chr5 (14-77)||(6866234-6866297)
chr5 (378-411)||(30510006-30510039)
chr5 (378-411)||(30550346-30550379)
chr5 (26-78)||(29094801-29094853)
[»] scaffold0308 (1 HSPs)
scaffold0308 (22-406)||(16936-17320)
[»] chr1 (4 HSPs)
chr1 (22-407)||(16873457-16873842)
chr1 (14-77)||(34853935-34853998)
chr1 (26-78)||(44930029-44930081)
chr1 (257-315)||(25505050-25505108)
[»] chr7 (7 HSPs)
chr7 (14-411)||(43571935-43572332)
chr7 (311-411)||(17855815-17855915)
chr7 (14-78)||(37724179-37724243)
chr7 (2-66)||(12379031-12379095)
chr7 (257-315)||(17804971-17805029)
chr7 (257-315)||(25924096-25924154)
chr7 (26-102)||(38780520-38780596)
[»] chr3 (7 HSPs)
chr3 (1-210)||(9163291-9163500)
chr3 (22-74)||(19824093-19824145)
chr3 (17-78)||(18369249-18369310)
chr3 (4-78)||(15484077-15484151)
chr3 (31-78)||(42675732-42675779)
chr3 (4-78)||(20822791-20822865)
chr3 (232-330)||(54440155-54440253)
[»] chr8 (5 HSPs)
chr8 (26-83)||(27083409-27083466)
chr8 (1-81)||(7555216-7555296)
chr8 (26-78)||(23942111-23942163)
chr8 (4-78)||(40467598-40467672)
chr8 (35-71)||(44083313-44083349)
[»] chr4 (6 HSPs)
chr4 (17-55)||(20669271-20669309)
chr4 (257-315)||(49926323-49926381)
chr4 (29-83)||(53809638-53809692)
chr4 (4-75)||(4640975-4641046)
chr4 (5-68)||(50451852-50451915)
chr4 (257-315)||(23657421-23657479)
[»] chr2 (2 HSPs)
chr2 (277-322)||(9669056-9669101)
chr2 (2-83)||(36803682-36803763)


Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 4474467 - 4474877
Alignment:
Q  1 aagaagccagatgagctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaagatgattgagatccacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  4474467 aagaagccagatgagctgcataaaggaacgtttagctttaccaaaacctgtcaaataagaaaactgcaccaaattatcggaaagattattgggatccacc 4474566  T
Q  101 cccatacaacctaaccaattgcacacctgctgccacaacacgatagtatttgggcaatgtaaaaccaaatgatcagcggttttaacatgaccgcaacctg 200  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  4474567 cccatacaacctaaccaattgcgcacctgctgccacaacaagatagtatttgggcaatgtaaaaacaaatgatcagcggtttcaacatgaccgcaacctg 4474666  T
Q  201 taccacaaagagttgcctcagaatttagaacaccacgggctgccaagtttgctttcgtaggcaaccgatttcgaagaagacgccaagcaaaaattgatac 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  4474667 taccacaaagagttgcctcggaatttagaacaccacgggctgcaaagtttgctttcgtaggcaactgatttcgaagaagccgccaagcaaaaattgatac 4474766  T
Q  301 cttcaatagaacctgatgatgctaaactagatccgatacgtcgtccatgggaggattgacatcctcagttaaaagatcataggctcctcgaacagtataa 400  Q
    ||||||  ||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4474767 cttcaacggaacctgatgatgctaaactagaaccgatacatcatccatgggaggattgacatcctcagttaaaagatcataggctcctcgaacagtataa 4474866  T
Q  401 ccccccacagg 411  Q
    |||||||||||    
T  4474867 ccccccacagg 4474877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 14 - 406
Target Start/End: Original strand, 33804563 - 33804955
Alignment:
Q  14 agctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaagatgattgagatccacccccatacaaccta 113  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| | ||||| |||  |||||||||||||| ||| ||    
T  33804563 agctgcagaaaggaacatttagctttaccaacacctgtcaaataagtaagctgcaccaaatgatcaggaagattattaggatccacccccatagaactta 33804662  T
Q  114 accaattgcacacctgctgccacaacacgatagtatttgggcaatgtaaaaccaaatgatcagcggttttaacatgaccgcaacctgtaccacaaagagt 213  Q
     |||||||| |||||||||||||||||  | || ||||||||||  |||||  || || || ||  ||| |||||||||||| |||||| ||||||||||    
T  33804663 gccaattgcgcacctgctgccacaacaatacagaatttgggcaaaataaaaataagtgttcggctatttcaacatgaccgcatcctgtatcacaaagagt 33804762  T
Q  214 tgcctcagaatttagaacaccacgggctgccaagtttgctttcgtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacc 313  Q
     | ||| ||||| ||||||||| | |||||||| |||||| | ||||| |||||||  |||||||| | ||||||||||||||| ||||||||  |||||    
T  33804763 cgtctcggaattaagaacaccatgagctgccaaatttgctcttgtaggtaaccgatcccgaagaagtctccaagcaaaaattgagaccttcaagggaacc 33804862  T
Q  314 tgatgatgctaaactagatccgatacgtcgtccatgggaggattgacatcctcagttaaaagatcataggctcctcgaacagtataacccccc 406  Q
    ||||||||| ||||||| ||| |  ||||||| ||  |||| |||  | |||  |||||||||||||| |||||||  || | ||||||||||    
T  33804863 tgatgatgccaaactagctccaaagcgtcgtctataagagggttgttaccctttgttaaaagatcataagctcctcagactgcataacccccc 33804955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 9565140 - 9565213
Alignment:
Q  5 agccagatgagctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatc 78  Q
    ||||| || |||||||| || |||| |||||||||||||||| | ||||||| || ||||||||||| ||||||    
T  9565140 agccaaataagctgcatgaacgaacttttagctttaccaacatccgtcaaatgagtaaactgcaccagatgatc 9565213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 21676782 - 21676725
Alignment:
Q  26 gaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaa 83  Q
    ||||||||||||||| ||||||| |||| ||| | |||||||| ||||||||||||||    
T  21676782 gaacgtttagctttatcaacaccagtcatatacgtaaactgcaacaaatgatcggaaa 21676725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 24749442 - 24749499
Alignment:
Q  26 gaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaa 83  Q
    |||| |||||||||||||  |||||||| ||| |||||||||| ||||||||||||||    
T  24749442 gaacatttagctttaccatgacctgtcatatatgaaaactgcagcaaatgatcggaaa 24749499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 26010671 - 26010718
Alignment:
Q  31 tttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatc 78  Q
    |||||||||||||||||||| ||||| || ||||||||||| ||||||    
T  26010671 tttagctttaccaacacctgccaaatgagtaaactgcaccagatgatc 26010718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 31297512 - 31297438
Alignment:
Q  4 aagccagatgagctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatc 78  Q
    |||||| || ||| |||| || |||| ||||||||||||||||||| ||| || || ||| ||||||||||||||    
T  31297512 aagccaaataagccgcatgaatgaacttttagctttaccaacacctctcatatgagtaaattgcaccaaatgatc 31297438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 7617185 - 7617148
Alignment:
Q  269 tttcgaagaagacgccaagcaaaaattgataccttcaa 306  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  7617185 tttcgaagaagacgccaagcaaaaattaagaccttcaa 7617148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 21548858 - 21548938
Alignment:
Q  242 gccaagtttgctttcgtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacctgatgatgc 322  Q
    |||| |||||||||||| || || |||| ||||| ||| ||||| ||||||| ||| ||||||||  |||||||| |||||    
T  21548858 gccaggtttgctttcgttggtaatcgatctcgaataagccgccacgcaaaaactgaaaccttcaaaggaacctgaggatgc 21548938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 22 - 407
Target Start/End: Complemental strand, 35123056 - 35122671
Alignment:
Q  22 aaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaagatgattgagatccacccccatacaacctaaccaattg 121  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | ||||| ||| | ||||||||||||| |||||| ||||||     
T  35123056 aaaggaacgtttagctttaccaacacctgccaaataagtaaactgcaccaaatgatcaggaagattattaaaatccacccccataaaacctagccaattt 35122957  T
Q  122 cacacctgctgccacaacacgatagtatttgggcaatgtaaaaccaaatgatcagcggttttaacatgaccgcaacctgtaccacaaagagttgcctcag 221  Q
    | ||||||||||||||| |  | || ||||||||||  ||||| |||||| || || |||| |||||||||||| |||||| |||||||||| ||||| |    
T  35122956 cgcacctgctgccacaataaaacagaatttgggcaaaataaaaacaaatgttcggctgtttcaacatgaccgcatcctgtatcacaaagagtcgcctctg 35122857  T
Q  222 aatttagaacaccacgggctgccaagtttgctttcgtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacctgatgatg 321  Q
    |||  ||||||||||| |||||||| |||||||| || || |||||||  |||||||| | |||||||||||| || ||||||||  | |||||||||||    
T  35122856 aatgaagaacaccacgagctgccaaatttgcttttgtgggtaaccgatcccgaagaagtctccaagcaaaaatcgagaccttcaaggggacctgatgatg 35122757  T
Q  322 ctaaactagatccgatacgtcgtccatgggaggattgacatcctcagttaaaagatcataggctcctcgaacagtataacccccca 407  Q
    | ||||||| ||| |  ||||||| |   |||||||| || |||| |||||||||||||| ||||||||||||| |||||| ||||    
T  35122756 ccaaactagctccaaagcgtcgtctaaaagaggattggcaccctctgttaaaagatcataagctcctcgaacagcataacctccca 35122671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 30510403 - 30510083
Alignment:
Q  14 agctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaagatgattgagatccacccccatacaaccta 113  Q
    ||||||| ||| ||||||||||||||||||||||||||| | |||| ||||||||| || |||||   ||||| |||  ||||| |||||||| ||||||    
T  30510403 agctgcagaaaagaacgtttagctttaccaacacctgtcgagtaagtaaactgcactaagtgatcatgaagattattcggatccgcccccatagaaccta 30510304  T
Q  114 accaattgcacacctgctgccacaacacgatagtatttgggcaatgtaaaaccaaatgatcagcggttttaacatgaccgcaacctgtaccacaaagagt 213  Q
     |||||||| |||||||||||||||||  | |||||||||||||  |||||  ||||| || || |||| ||||||||| || ||  || ||||||||||    
T  30510303 gccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcggccgtttcaacatgaccacagcccataacacaaagagt 30510204  T
Q  214 tgcctcagaatttagaacaccacgggctgccaagtttgctttcgtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacc 313  Q
     ||||||||| | ||||||||||| |||||||| |||||||| | ||| |||||||  || ||||| | |||||||||||| || ||||| ||  | |||    
T  30510203 cgcctcagaactgagaacaccacgagctgccaaatttgcttttgaaggtaaccgatcccggagaagtctccaagcaaaaatcgagacctttaaggggacc 30510104  T
Q  314 tgatgatgctaaactagatcc 334  Q
    ||| ||||| |||||||||||    
T  30510103 tgacgatgccaaactagatcc 30510083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 30550743 - 30550423
Alignment:
Q  14 agctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaagatgattgagatccacccccatacaaccta 113  Q
    ||||||| ||| ||||||||||||||||||||||||||| | |||| ||||||||| || |||||   ||||| |||  ||||| |||||||| ||||||    
T  30550743 agctgcagaaaagaacgtttagctttaccaacacctgtcgagtaagtaaactgcactaagtgatcatgaagattattcggatccgcccccatagaaccta 30550644  T
Q  114 accaattgcacacctgctgccacaacacgatagtatttgggcaatgtaaaaccaaatgatcagcggttttaacatgaccgcaacctgtaccacaaagagt 213  Q
     |||||||| |||||||||||||||||  | |||||||||||||  |||||  ||||| || || |||| ||||||||| || ||  || ||||||||||    
T  30550643 gccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcggccgtttcaacatgaccacagcccataacacaaagagt 30550544  T
Q  214 tgcctcagaatttagaacaccacgggctgccaagtttgctttcgtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacc 313  Q
     ||||||||| | ||||||||||| |||||||| |||||||| | ||| |||||||  || ||||| | |||||||||||| || ||||| ||  | |||    
T  30550543 cgcctcagaactgagaacaccacgagctgccaaatttgcttttgaaggtaaccgatcccggagaagtctccaagcaaaaatcgagacctttaaggggacc 30550444  T
Q  314 tgatgatgctaaactagatcc 334  Q
    ||| ||||| |||||||||||    
T  30550443 tgacgatgccaaactagatcc 30550423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 6866234 - 6866297
Alignment:
Q  14 agctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgat 77  Q
    |||||||| || |||| ||||||||| ||||||||||||| || || |||||||||||||||||    
T  6866234 agctgcatgaacgaacttttagctttgccaacacctgtcatatgagtaaactgcaccaaatgat 6866297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 411
Target Start/End: Complemental strand, 30510039 - 30510006
Alignment:
Q  378 cataggctcctcgaacagtataaccccccacagg 411  Q
    |||| |||||||||||||||||||||||||||||    
T  30510039 cataagctcctcgaacagtataaccccccacagg 30510006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 411
Target Start/End: Complemental strand, 30550379 - 30550346
Alignment:
Q  378 cataggctcctcgaacagtataaccccccacagg 411  Q
    |||| |||||||||||||||||||||||||||||    
T  30550379 cataagctcctcgaacagtataaccccccacagg 30550346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 29094853 - 29094801
Alignment:
Q  26 gaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatc 78  Q
    |||| ||||||||| |||||||||||||||  || |||||||||||| |||||    
T  29094853 gaacttttagcttttccaacacctgtcaaaagagtaaactgcaccaagtgatc 29094801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 22 - 406
Target Start/End: Original strand, 16936 - 17320
Alignment:
Q  22 aaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaagatgattgagatccacccccatacaacctaaccaattg 121  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | ||||| |||  |||||||||||||| |||||| |||||||    
T  16936 aaaggaacgtttagctttaccaacacctatcaaataagtaaactgcaccaaatgatcaggaagattattaggatccacccccatagaacctagccaattg 17035  T
Q  122 cacacctgctgccacaacacgatagtatttgggcaatgtaaaaccaaatgatcagcggttttaacatgaccgcaacctgtaccacaaagagttgcctcag 221  Q
    | ||||||||||||||| |  | || ||||||||||  |||||  ||||| || || |||| ||||||||| || | |||| |||||||||| ||||| |    
T  17036 cgcacctgctgccacaataaaacagaatttgggcaaaataaaaataaatgttcggctgtttcaacatgaccacatcttgtatcacaaagagtcgcctctg 17135  T
Q  222 aatttagaacaccacgggctgccaagtttgctttcgtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacctgatgatg 321  Q
    |||| ||||||||||| |||||||| |||||||| ||||| || ||||  |||||||| | |||||||||||| || ||||||||  | |||||||||||    
T  17136 aattaagaacaccacgagctgccaaatttgcttttgtaggtaaacgatcccgaagaagtctccaagcaaaaatcgagaccttcaaggggacctgatgatg 17235  T
Q  322 ctaaactagatccgatacgtcgtccatgggaggattgacatcctcagttaaaagatcataggctcctcgaacagtataacccccc 406  Q
    | ||||||| ||| |  |||| || ||  |||||||| || |||| |||||||||||||| |||||||| |||| ||||||||||    
T  17236 ccaaactaggtccaaagcgtcttctataagaggattggcaccctctgttaaaagatcataagctcctcggacagcataacccccc 17320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 22 - 407
Target Start/End: Complemental strand, 16873842 - 16873457
Alignment:
Q  22 aaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaagatgattgagatccacccccatacaacctaaccaattg 121  Q
    |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| | ||||| |||  |||||||||||||| |||||| |||||||    
T  16873842 aaaggaacatttagctttaccaacacctgccaaataagtaaactgcaccaaatgatcaggaagattattaggatccacccccataaaacctagccaattg 16873743  T
Q  122 cacacctgctgccacaacacgatagtatttgggcaatgtaaaaccaaatgatcagcggttttaacatgaccgcaacctgtaccacaaagagttgcctcag 221  Q
    | ||||||||||||||| |  | || ||||||||||  ||||| |||||| || || |||| |||||||||||| |||||| ||||||| || ||||| |    
T  16873742 cgcacctgctgccacaataaaacagaatttgggcaaaataaaaacaaatgttcggctgtttcaacatgaccgcatcctgtatcacaaagtgtcgcctctg 16873643  T
Q  222 aatttagaacaccacgggctgccaagtttgctttcgtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacctgatgatg 321  Q
    |||  ||||||||||| |||||||| |||||||| || || |||||||  |||||||| | |||||||||||| || ||||||||  | |||||||||||    
T  16873642 aatgaagaacaccacgagctgccaaatttgcttttgtgggtaaccgatcccgaagaagtctccaagcaaaaatcgagaccttcaaggggacctgatgatg 16873543  T
Q  322 ctaaactagatccgatacgtcgtccatgggaggattgacatcctcagttaaaagatcataggctcctcgaacagtataacccccca 407  Q
    | ||||||| ||| |  ||  ||  |   |||||||| || |||| |||||||||||||||||||||||||||| |||||| ||||    
T  16873542 ccaaactagctccaaagcgctgtgtaaaagaggattggcaccctctgttaaaagatcataggctcctcgaacagcataacctccca 16873457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 34853998 - 34853935
Alignment:
Q  14 agctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgat 77  Q
    |||||||| || |||||||||||||||||||||||||||| ||  | |||||||||||||||||    
T  34853998 agctgcatgaacgaacgtttagctttaccaacacctgtcatatctgtaaactgcaccaaatgat 34853935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 44930029 - 44930081
Alignment:
Q  26 gaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatc 78  Q
    ||||| |||||||||||||||||||||| ||||| |||||||| |||||||||    
T  44930029 gaacgcttagctttaccaacacctgtcatataagtaaactgcatcaaatgatc 44930081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 25505108 - 25505050
Alignment:
Q  257 gtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacctg 315  Q
    ||||||||||||| ||||||||| ||||||||||| | ||||||||||||  |||||||    
T  25505108 gtaggcaaccgatctcgaagaagccgccaagcaaagactgataccttcaaaggaacctg 25505050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 14 - 411
Target Start/End: Original strand, 43571935 - 43572332
Alignment:
Q  14 agctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaagatgattgagatccacccccatacaaccta 113  Q
    ||||||| ||| |||||||||||||||||||||| |||||| |||| ||||||||| || |||||   ||| | |||  ||||| |||||||| ||||||    
T  43571935 agctgcagaaaagaacgtttagctttaccaacacttgtcaagtaagtaaactgcactaagtgatcatgaaggttattcggatccgcccccatagaaccta 43572034  T
Q  114 accaattgcacacctgctgccacaacacgatagtatttgggcaatgtaaaaccaaatgatcagcggttttaacatgaccgcaacctgtaccacaaagagt 213  Q
     |||||||| |||||||||||||||||  | |||||||||||||  |||||  ||||| || || |||| ||||||||| |||||  || ||||||||||    
T  43572035 gccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcggccgtttcaacatgaccacaacccataacacaaagagt 43572134  T
Q  214 tgcctcagaatttagaacaccacgggctgccaagtttgctttcgtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacc 313  Q
     ||||||||| | ||||||||||| |||||||| |||||||| | ||| |||||||  || ||||| | |||||||||||| || ||||| ||  | |||    
T  43572135 cgcctcagaactgagaacaccacgagctgccaaatttgcttttgaaggtaaccgatcccggagaagtctccaagcaaaaatcgagacctttaaggggacc 43572234  T
Q  314 tgatgatgctaaactagatccgatacgtcgtccatgggaggattgacatcctcagttaaaagatcataggctcctcgaacagtataaccccccacagg 411  Q
    ||| ||||| | ||||| |||  | | ||| |||   ||||||   || |||| ||||| ||| |||| |||||||||||||||||||||||||||||    
T  43572235 tgacgatgccatactagctccattgcttcggccaaaagaggatgagcaccctctgttaatagaacataagctcctcgaacagtataaccccccacagg 43572332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 411
Target Start/End: Original strand, 17855815 - 17855915
Alignment:
Q  311 acctgatgatgctaaactagatccgatacgtcgtccatgggaggattgacatcctcagttaaaagatcataggctcctcgaacagtataaccccccacag 410  Q
    |||||||||||| ||||||| ||| ||  |||||||||  |||||||| || |||| ||||| |||||||| |||||||| |||| ||||||||||||||    
T  17855815 acctgatgatgccaaactagctccaatgtgtcgtccataagaggattggcaccctctgttaatagatcataagctcctcggacagcataaccccccacag 17855914  T
Q  411 g 411  Q
    |    
T  17855915 g 17855915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 37724243 - 37724179
Alignment:
Q  14 agctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatc 78  Q
    ||||||| ||| ||||||||| ||||||||||||||||||| |||| ||||||||| ||||||||    
T  37724243 agctgcagaaaagaacgtttaactttaccaacacctgtcaagtaagtaaactgcactaaatgatc 37724179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 12379095 - 12379031
Alignment:
Q  2 agaagccagatgagctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactg 66  Q
    |||||||| | ||| |||||||| |||||| ||||||||||| ||||||| ||||||| ||||||    
T  12379095 agaagccatacgagttgcataaaagaacgtctagctttaccaccacctgtaaaataagtaaactg 12379031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 17804971 - 17805029
Alignment:
Q  257 gtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacctg 315  Q
    |||||||||||||  |||||||| ||||||||||| | ||||||||||||  |||||||    
T  17804971 gtaggcaaccgatcacgaagaagccgccaagcaaagactgataccttcaaaggaacctg 17805029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 25924096 - 25924154
Alignment:
Q  257 gtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacctg 315  Q
    |||||||||||||  |||||||| ||||||||||| | ||||||||||||  |||||||    
T  25924096 gtaggcaaccgatcacgaagaagccgccaagcaaagactgataccttcaaaggaacctg 25924154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 38780596 - 38780520
Alignment:
Q  26 gaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaagatgattgagatccacccc 102  Q
    |||| ||||||||||||||||||| ||| ||| | ||||  ||||||||||||| ||| || ||| | |||||||||    
T  38780596 gaacatttagctttaccaacacctctcatatatgtaaaccacaccaaatgatcgaaaatattattaaaatccacccc 38780520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 9163500 - 9163291
Alignment:
Q  1 aagaagccagatgagctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaagatgattgagatccacc 100  Q
    ||||| |||||| ||||| | ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| | ||||| |||  ||||||||    
T  9163500 aagaatccagattagctgtagaaaggcacgtttagctttaccaacacctgccaaataagtaaactgcaccaaatgatcaggaagattattaggatccacc 9163401  T
Q  101 cccatacaacctaaccaattgcacacctgctgccacaacacgatagtatttgggcaatgtaaaaccaaatgatcagcggttttaacatgaccgcaacctg 200  Q
    |||||| |||||| |||||||  ||||||||||||||| |  | || ||||||||||  ||||| |||||| || || || | |||||||||||| ||||    
T  9163400 cccataaaacctagccaattgtgcacctgctgccacaataaaacagaatttgggcaaaataaaaacaaatgttcggctgtctcaacatgaccgcatcctg 9163301  T
Q  201 taccacaaag 210  Q
    || |||||||    
T  9163300 tatcacaaag 9163291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 19824145 - 19824093
Alignment:
Q  22 aaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaat 74  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19824145 aaaggaacgtttagctttaccaacacctgtcaaataagtaaactgcaccaaat 19824093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 18369310 - 18369249
Alignment:
Q  17 tgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatc 78  Q
    ||||| || |||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  18369310 tgcatgaatgaacttttagctttaccaacacctgtcaaataagtaaactccaccagatgatc 18369249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 15484151 - 15484077
Alignment:
Q  4 aagccagatgagctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatc 78  Q
    |||||| || |||||||| || || | ||| |||||||||||||||||||||| || ||||||||||| ||||||    
T  15484151 aagccaaataagctgcatgaacgagctttttgctttaccaacacctgtcaaatgagtaaactgcaccagatgatc 15484077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 42675779 - 42675732
Alignment:
Q  31 tttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatc 78  Q
    |||||||||||||||||||| ||||| || ||||||||||| ||||||    
T  42675779 tttagctttaccaacacctgccaaatgagtaaactgcaccagatgatc 42675732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 20822865 - 20822791
Alignment:
Q  4 aagccagatgagctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatc 78  Q
    ||||||||| |||||||  || || | ||| |||||||||||||||| ||||| || ||||||||||| ||||||    
T  20822865 aagccagataagctgcaagaacgatctttttgctttaccaacacctgccaaatgagtaaactgcaccagatgatc 20822791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 54440253 - 54440155
Alignment:
Q  232 accacgggctgccaagtttgctttcgtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacctgatgatgctaaactag 330  Q
    |||||| ||||| ||||||||||| ||||| || ||||| ||||  || || |||||||| ||||| | ||||||  |||||||| ||||| |||||||    
T  54440253 accacgagctgcaaagtttgctttagtaggtaatcgattccgaatgagccgtcaagcaaagattgagatcttcaaaggaacctgacgatgccaaactag 54440155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 27083409 - 27083466
Alignment:
Q  26 gaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaa 83  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  27083409 gaacgtttagctttaccaacacctgtcatataagtaaactgcaccaaatgatcggaaa 27083466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 7555216 - 7555296
Alignment:
Q  1 aagaagccagatgagctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcgga 81  Q
    |||||| ||||| ||||||| ||| |||||| |||||||||||||| |||||| ||||| ||| |||||||||||| ||||    
T  7555216 aagaagtcagattagctgcagaaacgaacgtctagctttaccaacatctgtcatataagtaaattgcaccaaatgagcgga 7555296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 23942111 - 23942163
Alignment:
Q  26 gaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatc 78  Q
    |||| ||||||||||||||||||||||| || || ||||||||||||||||||    
T  23942111 gaacttttagctttaccaacacctgtcatatgagtaaactgcaccaaatgatc 23942163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 40467598 - 40467672
Alignment:
Q  4 aagccagatgagctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatc 78  Q
    |||||| || ||| |||| || |||| ||||||||||||||||||| ||| || || ||||||||||||||||||    
T  40467598 aagccaaataagccgcatgaatgaacttttagctttaccaacacctatcatatgagtaaactgcaccaaatgatc 40467672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 44083349 - 44083313
Alignment:
Q  35 gctttaccaacacctgtcaaataagaaaactgcacca 71  Q
    |||||||||||||||||||||| || |||||||||||    
T  44083349 gctttaccaacacctgtcaaatgagtaaactgcacca 44083313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 20669271 - 20669309
Alignment:
Q  17 tgcataaaggaacgtttagctttaccaacacctgtcaaa 55  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  20669271 tgcagaaaggaacgtttagctttaccaacacctgtcaaa 20669309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 49926381 - 49926323
Alignment:
Q  257 gtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacctg 315  Q
    ||||||||||||| ||||||||| ||||||||||| | ||||||||||||  |||||||    
T  49926381 gtaggcaaccgatctcgaagaagccgccaagcaaagactgataccttcaaaggaacctg 49926323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 53809638 - 53809692
Alignment:
Q  29 cgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaa 83  Q
    |||||| |||||||| ||||||||| ||| | |||||||||||||||||||||||    
T  53809638 cgtttaactttaccaccacctgtcatatacgtaaactgcaccaaatgatcggaaa 53809692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 4641046 - 4640975
Alignment:
Q  4 aagccagatgagctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatg 75  Q
    |||||| || |||||||  || || |||||| |||||||||||||||||| || || |||||||||||||||    
T  4641046 aagccaaattagctgcaagaatgatcgtttatctttaccaacacctgtcatatgagtaaactgcaccaaatg 4640975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 50451852 - 50451915
Alignment:
Q  5 agccagatgagctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgca 68  Q
    ||||| || |||||||| || |||| ||||||||||||||||| |||||||| || ||||||||    
T  50451852 agccaaataagctgcatgaacgaacttttagctttaccaacacttgtcaaatgagtaaactgca 50451915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 23657421 - 23657479
Alignment:
Q  257 gtaggcaaccgatttcgaagaagacgccaagcaaaaattgataccttcaatagaacctg 315  Q
    |||||||||||||  |||||||| ||||||||||| | ||||||||||||  |||||||    
T  23657421 gtaggcaaccgatcacgaagaagccgccaagcaaagactgataccttcaaaggaacctg 23657479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 9669101 - 9669056
Alignment:
Q  277 aagacgccaagcaaaaattgataccttcaatagaacctgatgatgc 322  Q
    |||||||||||||||||| || ||||||||  ||||||||||||||    
T  9669101 aagacgccaagcaaaaatcgacaccttcaaaggaacctgatgatgc 9669056  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 36803682 - 36803763
Alignment:
Q  2 agaagccagatgagctgcataaaggaacgtttagctttaccaacacctgtcaaataagaaaactgcaccaaatgatcggaaa 83  Q
    |||||||| || |||||||  || || || |||||||||||  ||||||||| ||||| ||| |||| ||||||||||||||    
T  36803682 agaagccaaatcagctgcaagaatgagcgcttagctttacccgcacctgtcatataagtaaattgcaacaaatgatcggaaa 36803763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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