View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_high_9 (Length: 424)
Name: NF13711_high_9
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 22185651 - 22185358
Alignment:
| Q |
1 |
atagaagtagaataaataattaatcttcataataannnnnnn-attaaagtagttataattatacaagaatacgagagaaacataaatcattatgtatat |
99 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22185651 |
atagaagtagaataaataattaatcttcataataattttttttattaaagtagttataattatacaagaatacgagagaaacataaatcattatgtatat |
22185552 |
T |
|
| Q |
100 |
nnnnnnntgagaattataaatcaaactttgaggtgaattataaaaatacaaatactatgacgtacaaatgaaattatataaatttgataataaacggctc |
199 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22185551 |
aaaaaaatgagaattattaatcaaactttgaggtgaattataaaaatacaaatactatgacgtacaaatgaaattatataaatttgataataaacggctc |
22185452 |
T |
|
| Q |
200 |
acacaggccattaatgcacctcatataacaggcgggacaaccaactggacaatcagtgtaactaacacattgggcaattttaactgcaatgtca |
293 |
Q |
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| T |
22185451 |
acactggccatcaatgcacctcatataacaggcgggacaaccaccttgacaatcagtgtaactaacacattcggcaattttaactgcaatgtca |
22185358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 107 - 300
Target Start/End: Complemental strand, 22167361 - 22167157
Alignment:
| Q |
107 |
tgagaattataaatcaaactttgaggtgaattata--aaaatacaaatact---------atgacgtacaaatgaaattatataaatttgataataaacg |
195 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |||||| ||| ||||||||| |
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| T |
22167361 |
tgagaattataaatcaaactttgaggtaaattatataaaaatacaaatacttactctactatgacgtacaaatgaaataatataagttttttaataaacg |
22167262 |
T |
|
| Q |
196 |
gctcacacaggccattaatgcacctcatataacaggcgggacaaccaactggacaatcagtgtaactaacacattgggcaattttaactgcaatgtcata |
295 |
Q |
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| T |
22167261 |
gaatacactggccatcaatgcacctcatataacaggcgcgacaaccaactggacaatcaatgtaattataacattcgtaaactttacctgcaatgtcaga |
22167162 |
T |
|
| Q |
296 |
tgagc |
300 |
Q |
| |
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||||| |
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| T |
22167161 |
tgagc |
22167157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 22167984 - 22167883
Alignment:
| Q |
1 |
atagaagtagaataaataattaatcttcataataannnnnnn---attaaagtagttataattatacaagaatacgagagaaacataaatcattatgtat |
97 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22167984 |
atagaagtagaataaataattaatcttcataatcattttttttttattaaagtagttataattatacaagaatacgagagaaacataaatcattatgcat |
22167885 |
T |
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| Q |
98 |
at |
99 |
Q |
| |
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|| |
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|
| T |
22167884 |
at |
22167883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 22200609 - 22200549
Alignment:
| Q |
120 |
tcaaactttgaggtgaattataaaaatacaaatactatgacgtacaaatgaaattatataa |
180 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
22200609 |
tcaaactttgaggtaaattataaaaatacaaatactatgacatacatatgaaattatataa |
22200549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 359 - 408
Target Start/End: Complemental strand, 22185293 - 22185244
Alignment:
| Q |
359 |
gacataccagcatttcgtggtgtgtaacgtggcttatcaccatttgttac |
408 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22185293 |
gacataccagcatttcgaggtgtgtaacgtggcttatcaccatttgttac |
22185244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 22322154 - 22322090
Alignment:
| Q |
115 |
ataaatcaaactttgaggtgaattataaaaatacaaatactatgacgtacaaatgaaattatata |
179 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||| | ||||| ||||||| |||||||||| |
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|
| T |
22322154 |
ataaatcaaactttgagataaattataaaaatacaaacattatgaaatacaaataaaattatata |
22322090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 19328612 - 19328548
Alignment:
| Q |
114 |
tataaatcaaactttgaggtgaattataaaaa-tacaaatactatgacgtacaaatgaaattata |
177 |
Q |
| |
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||||||||||| ||||| || ||||||||||| |||||||| |||||| ||||||| |||||||| |
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| T |
19328612 |
tataaatcaaattttgaagtaaattataaaaaatacaaatattatgacatacaaataaaattata |
19328548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 26754073 - 26754043
Alignment:
| Q |
3 |
agaagtagaataaataattaatcttcataat |
33 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
26754073 |
agaagtagaataaataattaatcttcataat |
26754043 |
T |
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