View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_low_14 (Length: 388)
Name: NF13711_low_14
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 30076286 - 30076526
Alignment:
| Q |
11 |
cataggacacaaaagaggcttagtctcgggtggatgagtttatcatgtctctcattataaatgagtgagnnnnnnnccatgcgatataatattaaaataa |
110 |
Q |
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| T |
30076286 |
cataggacacaaaagaggcttagtctccggtggatgagtttatcatgtctctcactataagtgagtgagtttttttccatgcgatataatattaaagtaa |
30076385 |
T |
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| Q |
111 |
tggacaaccaagatcatcgaacggtaactcattgctacagtgcttacggtgagagaaataataaacttatccaccggagactatgcccatcatgaattaa |
210 |
Q |
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| T |
30076386 |
tggacaaccaagatcgttgaacggtaactcattgctacagtgcttacggtgagagaaataataaacttatccaccggagactatgcccatcatgaattaa |
30076485 |
T |
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| Q |
211 |
tgtagtgggaaatctaagtcgtttgatgaaaaatttgtgta |
251 |
Q |
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| T |
30076486 |
tgtagtgggaaatctaagtcgtttgatgaaaaatttgtgta |
30076526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 243 - 368
Target Start/End: Original strand, 30077109 - 30077234
Alignment:
| Q |
243 |
atttgtgtatggtttgtagtttgagttacattttaaaacatacatacaagtaaaatactcttcatcgtatgactataattaacgattttcattaatctag |
342 |
Q |
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| T |
30077109 |
atttgtgtatggtttatagtttgagttacattttaaaacatacatacaagtaaaatactcttcatcgtatgactataattaacgattttcgttaatctat |
30077208 |
T |
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| Q |
343 |
attacgtgaatgcataattctccttg |
368 |
Q |
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| T |
30077209 |
attacgtgaatgcataattctccttg |
30077234 |
T |
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