View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13711_low_2 (Length: 616)

Name: NF13711_low_2
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13711_low_2
NF13711_low_2
[»] chr7 (3 HSPs)
chr7 (1-376)||(24767475-24767855)
chr7 (491-534)||(30826511-30826554)
chr7 (492-535)||(35722547-35722590)
[»] chr3 (4 HSPs)
chr3 (5-292)||(48126935-48127219)
chr3 (320-379)||(48126877-48126936)
chr3 (553-587)||(55070189-55070223)
chr3 (303-368)||(42665646-42665710)
[»] chr6 (2 HSPs)
chr6 (380-607)||(24076016-24076230)
chr6 (551-581)||(5942532-5942562)
[»] chr2 (3 HSPs)
chr2 (242-376)||(4816330-4816464)
chr2 (70-174)||(4816190-4816294)
chr2 (496-539)||(44187773-44187816)
[»] chr8 (2 HSPs)
chr8 (285-376)||(42293450-42293541)
chr8 (497-534)||(30405194-30405231)
[»] chr4 (2 HSPs)
chr4 (338-376)||(1662454-1662492)
chr4 (492-544)||(2653735-2653787)
[»] chr1 (3 HSPs)
chr1 (320-374)||(32085537-32085591)
chr1 (491-538)||(47203772-47203820)
chr1 (493-538)||(27321299-27321344)
[»] scaffold0111 (1 HSPs)
scaffold0111 (505-538)||(37407-37440)


Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 24767475 - 24767855
Alignment:
Q  1 tcactcttatcataaggaaaaagtataagtatttcttattgtcgtttgttgttgtttcgactttcgagggttacttctagagaagagttgaagatattaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24767475 tcactcttatcataaggaaaaagtataagtatttcttattgttgtttgttgttgtttcgactttcgagggttacttctaaagaagagttgaagatattaa 24767574  T
Q  101 tctaagatgaagacggtgaaaacactgaaatgacatccaacttcgtatatgaggaagtatttcgtaacgtgtagcataaaaaactcac---atttaggag 197  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||   |||||||||    
T  24767575 tctaagatgaagacggtgaaaacactgaaatgacatccaacgtcgtctatgaggaagtatttcgtaacgtgtagcataaaaaacccacaatatttaggag 24767674  T
Q  198 aatgtacaacttcattatg--tgctggtgttgcattttaattaacaatacattactatcatctgacaatacattaatattaaatgtcctttttattttgt 295  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  24767675 aatgtacaacttcattatgtatgctggtgttgcattttaattaacaatatattactatcatcttacaatacattaatattaaatgtcatttttattttgt 24767774  T
Q  296 ttcagtattcatttcatattaagattagcaactatatttcggctaataagacccgtgcgacgcacgggtcaccagtctagt 376  Q
    ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24767775 ttcggaattcatttcatattaagattagcaactatatttcgtctaataagacccgtgcgacgcacgggtcaccagtctagt 24767855  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 534
Target Start/End: Original strand, 30826511 - 30826554
Alignment:
Q  491 atcaagtagtttagtagctaaaaattcacatttaaggtgaataa 534  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||    
T  30826511 atcaagtagtttagtagctaaaaattcatctttaaagtgaataa 30826554  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 535
Target Start/End: Original strand, 35722547 - 35722590
Alignment:
Q  492 tcaagtagtttagtagctaaaaattcacatttaaggtgaataag 535  Q
    |||||||||||||| ||||||||||||| |||| ||||||||||    
T  35722547 tcaagtagtttagtggctaaaaattcacctttagggtgaataag 35722590  T

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Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 48127219 - 48126935
Alignment:
Q  5 tcttatcataaggaaaaagtataagtatttcttattgtcgtttgttgttgtttcgactttcgagggttacttctagagaagagttgaagatattaatcta 104  Q
    ||||||||||||||||||||| |||||||||||||||| || ||| ||||||| ||       ||||||||||||||||| |||||||||||||||||      
T  48127219 tcttatcataaggaaaaagtaaaagtatttcttattgttgtatgtcgttgttttga-------gggttacttctagagaaaagttgaagatattaatcac 48127127  T
Q  105 agatgaagacggtgaaaacactgaaatgacatccaacttcgtatatgaggaagtatttcgtaacgtgtagcataaaaaactcacatttaggagaatgtac 204  Q
    | |||||||||||||||| | |||||  | || |||  |||| | |||  |||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  48127126 atatgaagacggtgaaaatattgaaaaaa-attcaatgtcgtctttgaaaaagtatttcgtaacgtgtagtataagaaacccacatttaggagaatgtac 48127028  T
Q  205 a-----acttcattatgtgctggtgttgcattttaattaacaatacattactatcatctgacaatacattaatattaaatgtcctttttattt 292  Q
    |     ||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  48127027 agtacaacttcattatgtgctggtgttgcattttaattaacgatacatttctattatctgacaatacattaatattaaatgtcctttttattt 48126935  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 48126936 - 48126877
Alignment:
Q  320 ttagcaactatatttcggctaataagacccgtgcgacgcacgggtcaccagtctagtcca 379  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||| |||| ||||    
T  48126936 ttagcaactatatttcggctaataagactcgtgcgacgtacgggtcaccaatctaatcca 48126877  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 587
Target Start/End: Original strand, 55070189 - 55070223
Alignment:
Q  553 tgtatatattatgcaatgtctctatcaacagagtt 587  Q
    ||||||||||||||||||| |||||||||||||||    
T  55070189 tgtatatattatgcaatgtatctatcaacagagtt 55070223  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 42665646 - 42665710
Alignment:
Q  303 ttcatttcatattaagattagcaactatatttcggctaataagacccgtgcgacgcacgggtcacc 368  Q
    |||||||||||||| ||||  |||||||| |||||||||||||  |  ||||||||||||||||||    
T  42665646 ttcatttcatattatgatttccaactataattcggctaataag-tcattgcgacgcacgggtcacc 42665710  T

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Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 380 - 607
Target Start/End: Complemental strand, 24076230 - 24076016
Alignment:
Q  380 atataaaagaagaaatcgagcaatgtaaactaaaaggagaactagaaaattacattacctaaccattggattattttggcacaaaatgtttgannnnnnn 479  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||           
T  24076230 atataaaagaagaaatcgagcaatgtaaacaaaaaggagaactagaaaattacattacctaaccattggattattttggcacaaaaggtttga------- 24076138  T
Q  480 nnnnnnnnnnnatcaagtagtttagtagctaaaaattcacatttaaggtgaataagtgggatgttcaaacttctgtatatattatgcaatgtctctatca 579  Q
               |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||   |  |||||||||||||||||| ||||||    
T  24076137 ---ttttttttatcaagtagtttagtagctaaaaattcacatttaagatgaataagtgggatgtttaaa---ccctatatattatgcaatgtccctatca 24076044  T
Q  580 acagagtttggtaaagaggtttgatgat 607  Q
    |||||| |||||| ||||||||||||||    
T  24076043 acagagcttggtagagaggtttgatgat 24076016  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 581
Target Start/End: Original strand, 5942532 - 5942562
Alignment:
Q  551 tctgtatatattatgcaatgtctctatcaac 581  Q
    |||||||||||||||||||||||||||||||    
T  5942532 tctgtatatattatgcaatgtctctatcaac 5942562  T

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Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 242 - 376
Target Start/End: Original strand, 4816330 - 4816464
Alignment:
Q  242 atacattactatcatctgacaatacattaatattaaatgtcctttttattttgtttcagtattcatttcatattaagattagcaactatatttcggctaa 341  Q
    ||||||||||||||  |||||||||||| ||||||||| |||    |||||||| || |||||||||||||||| |||| ||||||||||||||| ||||    
T  4816330 atacattactatcaattgacaatacattgatattaaatttccaaactattttgtatcggtattcatttcatatttagatcagcaactatatttcgtctaa 4816429  T
Q  342 taagacccgtgcgacgcacgggtcaccagtctagt 376  Q
    ||||||| |||||||| ||||||||||| ||||||    
T  4816430 taagacctgtgcgacgaacgggtcaccaatctagt 4816464  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 4816190 - 4816294
Alignment:
Q  70 gttacttctagagaagagttgaagatattaatctaagatgaagacggtgaaaacactgaaatgacatccaacttcgtatatgaggaagtatttcgtaacg 169  Q
    ||||||| |||||||| ||||||||||||||||  ||||||||| |||||| ||||||||||||||| |||| |||| |||||| || ||||| |||| |    
T  4816190 gttacttatagagaagggttgaagatattaatcacagatgaagatggtgaagacactgaaatgacattcaacgtcgtctatgagaaaatattttgtaatg 4816289  T
Q  170 tgtag 174  Q
    |||||    
T  4816290 tgtag 4816294  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 539
Target Start/End: Complemental strand, 44187816 - 44187773
Alignment:
Q  496 gtagtttagtagctaaaaattcacatttaaggtgaataagtggg 539  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||    
T  44187816 gtagtttagtggctaaaaattcacttttaaagtgaataagtggg 44187773  T

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Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 42293450 - 42293541
Alignment:
Q  285 ttttattttgtttcagtattcatttcatattaagattagcaactatatttcggctaataagacccgtgcgacgcacgggtcaccagtctagt 376  Q
    ||||||| |||||| |||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||    
T  42293450 ttttattgtgtttcggtattcttttcatattgagattagcaactatatttcggctcataagacccgtgcggcgcacgggtcaccaatctagt 42293541  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 534
Target Start/End: Complemental strand, 30405231 - 30405194
Alignment:
Q  497 tagtttagtagctaaaaattcacatttaaggtgaataa 534  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  30405231 tagtttaatggctaaaaattcacatttaaggtgaataa 30405194  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 1662492 - 1662454
Alignment:
Q  338 ctaataagacccgtgcgacgcacgggtcaccagtctagt 376  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1662492 ctaataagacccgtgcgacgcacgggtcaccagtctagt 1662454  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 544
Target Start/End: Original strand, 2653735 - 2653787
Alignment:
Q  492 tcaagtagtttagtagctaaaaattcacatttaaggtgaataagtgggatgtt 544  Q
    ||||||||| |||||| || |||||||  ||||||||||||||||||||||||    
T  2653735 tcaagtagtgtagtagttagaaattcatctttaaggtgaataagtgggatgtt 2653787  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 32085537 - 32085591
Alignment:
Q  320 ttagcaactatatttcggctaataagacccgtgcgacgcacgggtcaccagtcta 374  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  32085537 ttagcaacaatatttcggctaataagacgcgtgcaacgcacgggtcaccaatcta 32085591  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 538
Target Start/End: Original strand, 47203772 - 47203820
Alignment:
Q  491 atcaagtagtttagtagctaaaaattcacattt-aaggtgaataagtgg 538  Q
    ||||||||||||||| | ||||||||||||||| |||||||||||||||    
T  47203772 atcaagtagtttagtggttaaaaattcacatttaaaggtgaataagtgg 47203820  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 538
Target Start/End: Complemental strand, 27321344 - 27321299
Alignment:
Q  493 caagtagtttagtagctaaaaattcacatttaaggtgaataagtgg 538  Q
    ||||||||||||| ||||||||||||| |||||  |||||||||||    
T  27321344 caagtagtttagtggctaaaaattcacctttaaaatgaataagtgg 27321299  T

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Target: scaffold0111 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 538
Target Start/End: Complemental strand, 37440 - 37407
Alignment:
Q  505 tagctaaaaattcacatttaaggtgaataagtgg 538  Q
    ||||||||||||||||||||||||||||||||||    
T  37440 tagctaaaaattcacatttaaggtgaataagtgg 37407  T

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