View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_low_20 (Length: 337)
Name: NF13711_low_20
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 7646384 - 7646599
Alignment:
| Q |
20 |
gatagtgtatcaaaatcaaactttaaacttaattgcaattgttagaaatcatggaaatttgtaactaaaatcaaataaaaccatcataaaggagaatgat |
119 |
Q |
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| T |
7646384 |
gatagtgtatcaaaatcaaactttaaacttaattgcaattgttagaaatcatggaaatttgtaactgaaatcaaataaaaccatcataaaggagaatgat |
7646483 |
T |
|
| Q |
120 |
ttttatatatggagaacatgcaaaaacttaatattgttatgttagtgtagataaagatagtaaaagctataaggagacaaaccctcaatacctttgaatg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7646484 |
ttttatatatggagaacatgcaaaaacttaatattgttatgttagtgtagatatagatagtaaaagctataaggagacaaaccctcaatacctttgaatg |
7646583 |
T |
|
| Q |
220 |
cctggttttagatcct |
235 |
Q |
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|||||||||||||||| |
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| T |
7646584 |
cctggttttagatcct |
7646599 |
T |
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