View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_low_26 (Length: 283)
Name: NF13711_low_26
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 28102342 - 28102095
Alignment:
| Q |
15 |
gagatgaatttgggatgtggtgatgagggtggtggaccttgtggagcctgcaagtttttgagaagaaagtgtgtgaaaggttgttgcatatttgcaccat |
114 |
Q |
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| T |
28102342 |
gagatggatttgggatgtggtgatgagggtggtggaccttgtggagcctgcaagtttttgaggagaaagtgtgtgaaaggttgttgcatatttgcaccat |
28102243 |
T |
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| Q |
115 |
attttgagtcatcaggtcaaggaagtgctcattttgctgcagttcataaggtttttggtgctagcaatgctgctaaactactcacacgtattccagttca |
214 |
Q |
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| T |
28102242 |
attttgagtcatcaggtcaaggaagtgctcattttgctgcagttcataaggtttttggtgctagcaatgctgctaaactactcacacgtattccagttca |
28102143 |
T |
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| Q |
215 |
taagcgtcttgatgctgttgttactctttgctatgaggctcttgctag |
262 |
Q |
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| T |
28102142 |
taagcgtcttgatgctgttgttactctttgctatgaggctcttgctag |
28102095 |
T |
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Back To:
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Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 42 - 262
Target Start/End: Original strand, 13286781 - 13286995
Alignment:
| Q |
42 |
ggtggtggaccttgtggagcctgcaagtttttgagaagaaagtgtgtgaaaggttgttgcatatttgcaccatattttgagtcatcaggtcaaggaagtg |
141 |
Q |
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| T |
13286781 |
ggtggtgggccttgtggtgcttgcaagtttttgaggagaaagtgtgtaaaaggttg---catatttgcaccatattttgattca---gaccaaggaacgg |
13286874 |
T |
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| Q |
142 |
ctcattttgctgcagttcataaggtttttggtgctagcaatgctgctaaactactcacacgtattccagttcataagcgtcttgatgctgttgttactct |
241 |
Q |
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| T |
13286875 |
ttcattttgcagcagttcataaagtgtttggtgctagtaatgcctctaagttactcatgcgtattccagctcataaacgtcttgatgctgttgttactct |
13286974 |
T |
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| Q |
242 |
ttgctatgaggctcttgctag |
262 |
Q |
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| T |
13286975 |
ttgctatgaagctcttgctag |
13286995 |
T |
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