View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13711_low_3 (Length: 612)

Name: NF13711_low_3
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13711_low_3
NF13711_low_3
[»] chr6 (8 HSPs)
chr6 (1-325)||(6133583-6133907)
chr6 (1-291)||(6087774-6088063)
chr6 (342-593)||(6134109-6134360)
chr6 (201-284)||(6866454-6866537)
chr6 (1-78)||(6866299-6866376)
chr6 (454-522)||(2718762-2718830)
chr6 (458-522)||(2721835-2721899)
chr6 (454-490)||(9771915-9771951)
[»] chr2 (4 HSPs)
chr2 (454-522)||(42237569-42237637)
chr2 (454-522)||(11445479-11445546)
chr2 (459-511)||(12352529-12352581)
chr2 (454-488)||(44705191-44705225)
[»] chr4 (7 HSPs)
chr4 (468-528)||(4848639-4848699)
chr4 (460-528)||(5198998-5199066)
chr4 (454-522)||(16962266-16962333)
chr4 (454-522)||(21315575-21315642)
chr4 (454-528)||(49583148-49583222)
chr4 (456-522)||(46824648-46824713)
chr4 (454-483)||(29866154-29866183)
[»] chr5 (3 HSPs)
chr5 (454-527)||(37247603-37247675)
chr5 (454-504)||(23325342-23325392)
chr5 (459-515)||(21253354-21253410)
[»] chr7 (4 HSPs)
chr7 (454-522)||(6218221-6218288)
chr7 (454-504)||(24118401-24118451)
chr7 (456-502)||(2301336-2301382)
chr7 (461-522)||(8560277-8560338)
[»] scaffold0526 (1 HSPs)
scaffold0526 (454-521)||(3335-3402)
[»] chr8 (4 HSPs)
chr8 (461-528)||(7411339-7411406)
chr8 (456-522)||(3424305-3424370)
chr8 (456-522)||(27054431-27054496)
chr8 (454-522)||(18076463-18076531)
[»] scaffold0472 (1 HSPs)
scaffold0472 (454-522)||(11812-11877)
[»] chr1 (3 HSPs)
chr1 (456-512)||(26828570-26828626)
chr1 (469-509)||(16422502-16422542)
chr1 (454-502)||(24909027-24909074)
[»] chr3 (1 HSPs)
chr3 (456-504)||(32104206-32104254)


Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-178; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 6133583 - 6133907
Alignment:
Q  1 tcttatttggcgaagagtataatggccacatgatagttgaatagcatgtaaagcttgaccattttttgatttccaatcagactgtttagaatgtaaggca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6133583 tcttatttggcgaagagtataatggccacatgatagttgaatagcatgtaaagcttgaccattttttgatttccaatcagactgtttagaatgtaaggca 6133682  T
Q  101 tcatcattttttgttttcccatcagactgaataggattgacattaccctcgacaacattgtcccaaagaccttttccaatgagataattctttaccagca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6133683 tcatcattttttgttttcccatcagactgaataggattgacattaccctcgacaacattgtcccaaagaccttttccaatgagataattcttcaccagca 6133782  T
Q  201 cactccaatctaagtaattatctcttgtaagaacttcaagaactattccggttgatgcaatatttgcagctgccattaagatctgccaaaaatatatccc 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6133783 cactccaatctaagtaattatctcttgttagaacttcaagaactattccggttgatgcaatatttgcagctgccattaagatctgccaaaaatatatccc 6133882  T
Q  301 aatttacaaaataaaatgaataagg 325  Q
    |||||||||||||||||||||||||    
T  6133883 aatttacaaaataaaatgaataagg 6133907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 6088063 - 6087774
Alignment:
Q  1 tcttatttggcgaagagtataatggccacatgatagttgaatagcatgtaaagcttgaccattttttgatttccaatcagactgtttagaatgtaaggca 100  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  6088063 tcttatttggcgaagattataatgaccacatgatagttgaatagcatgtaaggcttgaccattttttgatttccaatcagactgttcagaatgtaaggca 6087964  T
Q  101 tcatcattttttgttttcccatcagactgaataggattgacattaccctcgacaacattgtcccaaagaccttttccaatgagataattctttaccagca 200  Q
    |||||| |||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6087963 tcatcagtttttgatttcccatcagaccgtataggattgacattaacctcgacaacattgtcccaaagaccttttccaatgagataattcttcaccagca 6087864  T
Q  201 cactccaatctaagtaattatctcttgtaagaacttcaagaactattccggttgatgcaatatttgcagctgccattaagatctgccaaaa 291  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||    
T  6087863 cactccaatctaagtaattatctcttgttagaacttcaagaactattccagttgatgcaatatttgcagctgcca-tatgatctgccaaaa 6087774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 342 - 593
Target Start/End: Original strand, 6134109 - 6134360
Alignment:
Q  342 ttattaattctataagacaagttaattttactgacaaaaataacggtcgcagttgcattaatgatttcacaatttctgttgttgcggatattgggttaca 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6134109 ttattaattctataagacaagttaattttactgacaaaaataacggtcgcagttgcattaatgatttcacaatttctgttgttgcggatattgggttaca 6134208  T
Q  442 tattgcacagtttgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttcnnnnnnnnnnnnn 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  6134209 tattgcacagtttgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttcttttttctttttt 6134308  T
Q  542 nnnnnacaaacaatttcttattatttcttatttgttcccaccatttgctaca 593  Q
         |||||||||||||||||||||||||||||||||||||||||||||||    
T  6134309 tttttacaaacaatttcttattatttcttatttgttcccaccatttgctaca 6134360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 6866454 - 6866537
Alignment:
Q  201 cactccaatctaagtaattatctcttgtaagaacttcaagaactattccggttgatgcaatatttgcagctgccattaagatct 284  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||    
T  6866454 cactccaatccaagtaattttctcttgtaagaacttcaagaactattccggttgatgcaatacttgcagcttccattatgatct 6866537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 6866299 - 6866376
Alignment:
Q  1 tcttatttggcgaagagtataatggccacatgatagttgaatagcatgtaaagcttgaccattttttgatttccaatc 78  Q
    |||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6866299 tcttatctggccaagagtataatgaccacatgagagttgaatagcatgtaaagcttgaccattttttgatttccaatc 6866376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 454 - 522
Target Start/End: Complemental strand, 2718830 - 2718762
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    ||||||||||||||| || ||||||| |||||||||| ||||||| ||||| |||||||||||||||||    
T  2718830 tgaattaatcacaacctttcacaaatattattaaaattatttatattatcatataatgtataataactt 2718762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 2721899 - 2721835
Alignment:
Q  458 ttaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    ||||||||||| ||||| |||| |||||||||| ||||||||||||| |||||||||||||||||    
T  2721899 ttaatcacaaccttgcataaatattattaaaattatttatactatcatataatgtataataactt 2721835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 9771951 - 9771915
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaat 490  Q
    |||||||||||||||||||||||||| ||||||||||    
T  9771951 tgaattaatcacaacattgcacaaatgttattaaaat 9771915  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 454 - 522
Target Start/End: Original strand, 42237569 - 42237637
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||    
T  42237569 tgaattaaccacaacattgcacaaatcttattaaaattatttatattatcaaacaatgtataataactt 42237637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 522
Target Start/End: Complemental strand, 11445546 - 11445479
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    |||||||||||||||| | ||| ||| |||||||| |||||||| |||||| |||||||||||||||||    
T  11445546 tgaattaatcacaacaatccacgaatattattaaa-tcatttattctatcatataatgtataataactt 11445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 511
Target Start/End: Original strand, 12352529 - 12352581
Alignment:
Q  459 taatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatg 511  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||| ||||||    
T  12352529 taatcacaacattgcacaaatcttattaaacttatttacactatcatataatg 12352581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 488
Target Start/End: Complemental strand, 44705225 - 44705191
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaa 488  Q
    ||||| |||||||||||||||||||||||||||||    
T  44705225 tgaatgaatcacaacattgcacaaatcttattaaa 44705191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 468 - 528
Target Start/End: Complemental strand, 4848699 - 4848639
Alignment:
Q  468 cattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttc 528  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  4848699 cattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttc 4848639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 460 - 528
Target Start/End: Original strand, 5198998 - 5199066
Alignment:
Q  460 aatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttc 528  Q
    ||||| |||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||| |||||    
T  5198998 aatcataacattgcacaaatattattaaaattatttatattatcatataatgtataataacttaatttc 5199066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 522
Target Start/End: Complemental strand, 16962333 - 16962266
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    |||||||||||| ||| ||||||||| |||||||| |||||||| |||||| ||||||||||| |||||    
T  16962333 tgaattaatcacgacaatgcacaaatattattaaa-tcatttattctatcatataatgtataaaaactt 16962266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 522
Target Start/End: Original strand, 21315575 - 21315642
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    |||||||||||||||| ||||||||| |||||  |||||||||| |||||| ||| |||||||||||||    
T  21315575 tgaattaatcacaacaatgcacaaatattatt-taatcatttattctatcatatagtgtataataactt 21315642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 528
Target Start/End: Original strand, 49583148 - 49583222
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttc 528  Q
    ||||||||||||||||||||| || |||||| ||||| | ||||||||||  ||| ||||||||| ||| |||||    
T  49583148 tgaattaatcacaacattgcataagtcttataaaaattaattatactatcttatattgtataatagcttaatttc 49583222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 522
Target Start/End: Original strand, 46824648 - 46824713
Alignment:
Q  456 aattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    |||||||||||||| ||||||||| |||||  |||||||||| |||||| ||| ||||||| |||||    
T  46824648 aattaatcacaacaatgcacaaatattatt-taatcatttattctatcatatagtgtataagaactt 46824713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 483
Target Start/End: Complemental strand, 29866183 - 29866154
Alignment:
Q  454 tgaattaatcacaacattgcacaaatctta 483  Q
    ||||||||||||||||||||||||||||||    
T  29866183 tgaattaatcacaacattgcacaaatctta 29866154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 527
Target Start/End: Complemental strand, 37247675 - 37247603
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgattt 527  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||| |||||| ||| ||||||||||||| ||||    
T  37247675 tgaattaatcacaacaatgcacaaatattatt-aaatcatttattctatcatatagtgtataataacttaattt 37247603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 504
Target Start/End: Original strand, 23325342 - 23325392
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatca 504  Q
    ||||| |||||||| |||||||| ||||||||||||| ||||| |||||||    
T  23325342 tgaatcaatcacaaaattgcacatatcttattaaaattatttacactatca 23325392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 21253354 - 21253410
Alignment:
Q  459 taatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtata 515  Q
    ||||||| | ||||| ||||| |||||||| | ||||||||||||| ||||||||||    
T  21253354 taatcacgaaattgctcaaattttattaaacttatttatactatcatataatgtata 21253410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 454 - 522
Target Start/End: Complemental strand, 6218288 - 6218221
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||| |||||| ||| |||||||||||||    
T  6218288 tgaattaatcacaacaatgcacaaatattatt-aaatcatttattctatcatatagtgtataataactt 6218221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 504
Target Start/End: Complemental strand, 24118451 - 24118401
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatca 504  Q
    |||||| |||||||||||| ||||||||||||||||| ||| |||||||||    
T  24118451 tgaattcatcacaacattgtacaaatcttattaaaattattcatactatca 24118401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 502
Target Start/End: Complemental strand, 2301382 - 2301336
Alignment:
Q  456 aattaatcacaacattgcacaaatcttattaaaatcatttatactat 502  Q
    ||||||||  ||||| ||||||||||| |||||||||||||||||||    
T  2301382 aattaatcgtaacatagcacaaatcttgttaaaatcatttatactat 2301336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 522
Target Start/End: Original strand, 8560277 - 8560338
Alignment:
Q  461 atcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    |||||||  ||||||| ||||||||||||| ||||||| || || |||| ||||||||||||    
T  8560277 atcacaatgttgcacatatcttattaaaattatttatattaacatataaagtataataactt 8560338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 454 - 521
Target Start/End: Complemental strand, 3402 - 3335
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataact 521  Q
    ||||||||||||||||||||||||||  || | |||| ||||||||||||| |||||| |||||||||    
T  3402 tgaattaatcacaacattgcacaaattataattaaattatttatactatcagataatgcataataact 3335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 528
Target Start/End: Original strand, 7411339 - 7411406
Alignment:
Q  461 atcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttc 528  Q
    ||||||||||| |||||||||||||||||| ||||||  ||||  ||||||||||||||||| |||||    
T  7411339 atcacaacatttcacaaatcttattaaaattatttatgatatcttataatgtataataacttaatttc 7411406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 456 - 522
Target Start/End: Original strand, 3424305 - 3424370
Alignment:
Q  456 aattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    |||||||||||||| ||||||| | |||| ||||| ||||||||||||| |||||||||||||||||    
T  3424305 aattaatcacaacaatgcacaa-tattataaaaattatttatactatcatataatgtataataactt 3424370  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 456 - 522
Target Start/End: Original strand, 27054431 - 27054496
Alignment:
Q  456 aattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    |||||||||||||| | ||||||| |||||||| |||||||| |||||| |||||||||||||||||    
T  27054431 aattaatcacaacaatccacaaatattattaaa-tcatttattctatcatataatgtataataactt 27054496  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 522
Target Start/End: Original strand, 18076463 - 18076531
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    |||| |||||| ||| | ||||||||||||||||||| |||| | || ||| |||||||||||||||||    
T  18076463 tgaactaatcataacgtagcacaaatcttattaaaattatttgtgctgtcatataatgtataataactt 18076531  T

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Target: scaffold0472 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 454 - 522
Target Start/End: Original strand, 11812 - 11877
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 522  Q
    |||||||| |||||||||||||||||||||||||||| |||||   ||||||| | |||||||||||||    
T  11812 tgaattaaccacaacattgcacaaatcttattaaaattattta---tatcaaacagtgtataataactt 11877  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 512
Target Start/End: Complemental strand, 26828626 - 26828570
Alignment:
Q  456 aattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgt 512  Q
    |||||||||||||||||||||||| |||||||| | |||||||||| || |||||||    
T  26828626 aattaatcacaacattgcacaaattttattaaacttatttatactaacatataatgt 26828570  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 509
Target Start/End: Complemental strand, 16422542 - 16422502
Alignment:
Q  469 attgcacaaatcttattaaaatcatttatactatcaaataa 509  Q
    ||||||| |||||||||||||| ||||||||||||| ||||    
T  16422542 attgcacgaatcttattaaaattatttatactatcatataa 16422502  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 24909074 - 24909027
Alignment:
Q  454 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactat 502  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||| ||||    
T  24909074 tgaattaatcacaacaatgcacaaatattatt-aaatcatttattctat 24909027  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 504
Target Start/End: Original strand, 32104206 - 32104254
Alignment:
Q  456 aattaatcacaacattgcacaaatcttattaaaatcatttatactatca 504  Q
    ||||||||||||||| |||||||  |||||||||| |||||| ||||||    
T  32104206 aattaatcacaacatggcacaaacgttattaaaattatttatgctatca 32104254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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