View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_low_32 (Length: 265)
Name: NF13711_low_32
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 34933179 - 34933327
Alignment:
| Q |
101 |
tacttacatacatacctgcaaccctagaagaagaagtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcctga |
200 |
Q |
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| T |
34933179 |
tacttacatacatacctgcaaccctagaagaacaagtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcctga |
34933278 |
T |
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| Q |
201 |
gcctctctatttatgaatgaacatgtgccatttacacgagagaatattc |
249 |
Q |
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| T |
34933279 |
gcctctctatttatgaatgaacatgtgccctttacacgagagaatattc |
34933327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 34926734 - 34926816
Alignment:
| Q |
117 |
tgcaaccctagaagaagaagtgt--gtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcc |
197 |
Q |
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|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
34926734 |
tgcaacccgagaagaacaagtgtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatatttccaaacccaagcc |
34926816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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