View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_low_35 (Length: 243)
Name: NF13711_low_35
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 25929091 - 25929304
Alignment:
| Q |
17 |
aatgacaatagtaaatggcatatggatatgggaggggatggcaagatacccatttgggagcactaatgtcatgtgatacttttaaaatggtgtatttttg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
25929091 |
aatgacaatagtaaatggcatatggatatgggaggggatggcaagatacccatttgggaacactaatgtcacgtgatacttttaaaatggtgtatttttg |
25929190 |
T |
|
| Q |
117 |
gagagggatagccgagggtgaggggtgggtggttgtaagaacattatgcttggagtcggaaccaattattttgtcaacaaattcaagcatggactctata |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25929191 |
gagagggatagccgagggtgaggggtgggtggtagtaagaacattatgcttggagtcggaaccaattattttgtcaacaaattcaagcatggactctata |
25929290 |
T |
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| Q |
217 |
gagttggcacaggt |
230 |
Q |
| |
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|||||||||||||| |
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| T |
25929291 |
gagttggcacaggt |
25929304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 26162074 - 26162271
Alignment:
| Q |
17 |
aatgacaatagtaaatggcatatggatatgggaggggatggcaagatacccatttgggagcactaatgtcatgtgatacttttaaaatggtgtatttttg |
116 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||| ||||||||||||| ||||||||||| || || |
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| T |
26162074 |
aatgacaaaagtaaatggcatatggatatgagaggggatgacaagctacccatttgggagcatcaatatcatgtgatacttccaaaatggtgtaattctg |
26162173 |
T |
|
| Q |
117 |
gagagggatagccgagggtgaggggtgggtggttgtaagaacattatgcttggagtcggaaccaattattttgtcaacaaattcaagcatggactcta |
214 |
Q |
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| T |
26162174 |
taaagggatggctgtcgatgagggtttggtggtagtgagaatattatgtttcgcgtatgaaccaatgatcgtgtcaacaaattcgagcatggactcta |
26162271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 26192150 - 26192361
Alignment:
| Q |
17 |
aatgacaatagtaaatggcatatggatatgggaggggatggcaagatacccatttgggagcactaatgtcatgtgatacttttaaaatggtgtatttttg |
116 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| ||||| |
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| T |
26192150 |
aatggcaatagtaaatggcatatggatatggaaggggatgacaagctacccatttgggaacatcaatatcatgtgatacttctaaaacagtgtacttttg |
26192249 |
T |
|
| Q |
117 |
gagagggatagccgagggtgaggggtgggtggttgtaagaacattatgcttggagtcggaaccaattattttgtcaacaaattcaagcatggactctata |
216 |
Q |
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|||||| ||| ||||||||||| | | || || |||| | ||| ||| || |||||||| ||| ||||||||||||| ||||||||||||| | |
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| T |
26192250 |
tagaggggtagttctgggtgaggggttgctcgtggttagaatactatatttgacgtttgaaccaataattgtgtcaacaaattcgagcatggactctaga |
26192349 |
T |
|
| Q |
217 |
gagttggcacag |
228 |
Q |
| |
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|| ||||||||| |
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| T |
26192350 |
gaattggcacag |
26192361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 25648815 - 25648622
Alignment:
| Q |
34 |
gcatatggatatgggaggggatggcaagatacccatttgggagcactaatgtcatgtgatacttttaaaatggtgtatttttggagagggatagccgagg |
133 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||||| | ||| |||| || | |||||||| || ||||||||||| | ||||||||| || |||| |
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| T |
25648815 |
gcatatggatatggcatgggatggcaagatacccatttagatgcattaatatcgtctgatacttccaagatggtgtatttctagagagggatggctgagg |
25648716 |
T |
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| Q |
134 |
gtgaggggtgggtggttgtaagaacattatgcttggagtcggaaccaattattttgtcaacaaattcaagcatggactctatagagttggcaca |
227 |
Q |
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|||| |||| | ||||||| |||| || || |||| || |||||||||||| |||||||||||| |||||| ||||||| |||||| |||| |
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| T |
25648715 |
gtgatgggttgttggttgtgagaatatcatatttggcttctgaaccaattattgtgtcaacaaatttaagcatagactctacggagttgacaca |
25648622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 26179871 - 26180081
Alignment:
| Q |
17 |
aatgacaatagtaaatggcatatggatatgggaggggatggcaagatacccatttgggagcactaatgtcatgtgatacttttaaaatggtgtatttttg |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| |||| ||||||||| |||||| ||| ||||| ||||||| ||||||||||| || || |
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| T |
26179871 |
aatgacaaaagtaaatggcatatggatatgagaggggatgacaagctacccattttggagcatcaatatcatgggatacttccaaaatggtgtacttctg |
26179970 |
T |
|
| Q |
117 |
gagagggatagccgagggtgaggggtgggtggttgtaagaacattatgcttggagtcggaaccaattattttgtcaacaaattcaagcatggactctata |
216 |
Q |
| |
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| ||||| ||| | |||||||| | | |||| || |||| | || |||| || ||||||| || ||| ||||||||| ||||||||||||| | |
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| T |
26179971 |
taaagggacagctgtcggtgagggtttgttggtggttagaatactaattttggcatctgaaccaaagatcgtgttaacaaattcgagcatggactctaga |
26180070 |
T |
|
| Q |
217 |
gagttggcaca |
227 |
Q |
| |
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||||||||||| |
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| T |
26180071 |
gagttggcaca |
26180081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 228
Target Start/End: Original strand, 26175213 - 26175389
Alignment:
| Q |
52 |
ggatggcaagatacccatttgggagcactaatgtcatgtgatacttttaaaatggtgtatttttggagagggatagccgagggtgaggggtgggtggttg |
151 |
Q |
| |
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||||| |||| |||||||| |||| || ||| ||||||||||||| |||||||||||| ||||| |||||||||| || |||||||| | |||| | |
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| T |
26175213 |
ggatgacaagctacccattagggaacatcaatatcatgtgatacttctaaaatggtgtacttttgtagagggatagttctggttgaggggttgctggtgg |
26175312 |
T |
|
| Q |
152 |
taagaacattatgcttggagtcggaaccaattattttgtcaacaaattcaagcatggactctatagagttggcacag |
228 |
Q |
| |
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| |||| | ||| ||| || ||| ||| ||| ||||||||||||||||||||| |||| ||| ||||||||| |
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|
| T |
26175313 |
tcagaatactatatttgacgtttaaactaataattgtgtcaacaaattcaagcatgggctcttaagaattggcacag |
26175389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 32189681 - 32189472
Alignment:
| Q |
18 |
atgacaatagtaaatggcatatggatatgggaggggatggcaagatacccatttgggagcactaatgtcatgtgatacttttaaaatggtgtatttttgg |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||| ||||||||| |||||||||||||| ||| |
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| T |
32189681 |
atgacaaccgtaaatggcatatggatatgggatgggatggcaagcaacccattttggagcattaatgtcaggtgatacttccaaaatggtgtatttctgg |
32189582 |
T |
|
| Q |
118 |
agagggatagccgagggtgaggggtgggtggttgtaagaacattatgcttggagtcggaaccaattattttgtcaacaaattcaagcatggactctatag |
217 |
Q |
| |
|
|||||| | | | |||||| |||| | ||||||| |||| || || |||| || |||||||||||| || |||| ||||||||||||||||||| || |
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| T |
32189581 |
agaggggtggttgtgggtgatgggttgctggttgtgagaatatcatatttggcttctgaaccaattattgtgccaacgaattcaagcatggactctaaag |
32189482 |
T |
|
| Q |
218 |
agttggcaca |
227 |
Q |
| |
|
||||| |||| |
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|
| T |
32189481 |
agttgacaca |
32189472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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