View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_low_38 (Length: 229)
Name: NF13711_low_38
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 58 - 210
Target Start/End: Complemental strand, 4474078 - 4473925
Alignment:
| Q |
58 |
ttaagtggaggattttataaagaaagtttaattctctttcnnnnnnnntaaagtttaatttgtagaaaaaatcatcaaatatggatatttatcttaatta |
157 |
Q |
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| T |
4474078 |
ttaagtggaggattttataaagaaagtttaattctctttcaaaaaaaataaagtttaatttgtagaaaaaatcatcaaatatggatatttatcttaatta |
4473979 |
T |
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| Q |
158 |
gaaaaaactta-tttaacaccggattaaatgataaattcattaatattgagtat |
210 |
Q |
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| T |
4473978 |
gaaaaatctgattttaacaatggattaaatgataaattcattaatattgagtat |
4473925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 4472198 - 4472102
Alignment:
| Q |
110 |
gtttaatttgtagaaaaaatcatcaaatatggatatttatcttaattagaaaaaacttatttaacaccggattaaatgataaattcattaatattgagt |
208 |
Q |
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| T |
4472198 |
gtttaatttgtagaaaaaatcatcaaatatggatatttatcttaattaggaaaatctgattt-tcacttgatt-aatgataaattcataaatatagagt |
4472102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 4473638 - 4473585
Alignment:
| Q |
110 |
gtttaatttgtagaaaaaatcatcaaatatggatatttatcttaattagaaaaa |
163 |
Q |
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| T |
4473638 |
gtttaatttgtagaaaaaaacatcaaatatggatatttatcttaattagaaaaa |
4473585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 4473410 - 4473313
Alignment:
| Q |
110 |
gtttaatttgtagaaaaaatcatcaaatatggatatttatcttaattagaaaaaacttatttaacaccggattaaatgataaattcattaatattgagta |
209 |
Q |
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| T |
4473410 |
gtttaatttgtagaaaaaattagcaaatatggatatttatcttaattagaaaaatctgattt-acacttgatt-aatgataaatttatagatattgagta |
4473313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 4472311 - 4472215
Alignment:
| Q |
112 |
ttaatttgtagaaaaaatcatcaaatatggatatttatcttaattagaaaaaacttatttaacaccggattaaatgataaattcattaatattgagtat |
210 |
Q |
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| T |
4472311 |
ttaatttgtagaaaaaatcatcaaaaatggatatttatctttattagaaaaatctgattt-tcccttgatt-aatgataaattcataaatattgagtat |
4472215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 4473524 - 4473471
Alignment:
| Q |
110 |
gtttaatttgtagaaaaaatcatcaaatatggatatttatcttaattagaaaaa |
163 |
Q |
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| T |
4473524 |
gtttaatttgtagaaaaaatcatcaaatatggatatttaccttagttagaaaaa |
4473471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 4473754 - 4473655
Alignment:
| Q |
110 |
gtttaatttgtagaaaaaatcatcaaatatggatatttatcttaattagaaaaaactta-tttaacaccggattaaatgataaattcattaatattgagt |
208 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||| || | ||| |||| ||||| |||||||||||||| ||||| |||| |
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| T |
4473754 |
gtttaatttgtagaaaaa-tcatcagatatggatatttatcttaattagaaaagtctgattttcacactggatt-aatgataaattcataaatatagagt |
4473657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 4473904 - 4473850
Alignment:
| Q |
110 |
gtttaatttgtagaaaaaa-tcatcaaatatggatatttatcttaattagaaaaa |
163 |
Q |
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| T |
4473904 |
gtttaatttgtagaaaaaaatcatcaaatatggatatttttcttaatttgaaaaa |
4473850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 4472373 - 4472335
Alignment:
| Q |
58 |
ttaagtggaggattttataaagaaagtttaattctcttt |
96 |
Q |
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| T |
4472373 |
ttaagtggaggattttatgaagaaagtttaattctcttt |
4472335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 4474464 - 4474434
Alignment:
| Q |
20 |
tacttgggtcgtgtggaccgaacgtaataac |
50 |
Q |
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| T |
4474464 |
tacttgggtcgtgtggaccgaacgtaataac |
4474434 |
T |
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