View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_low_4 (Length: 610)
Name: NF13711_low_4
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_low_4 |
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| [»] scaffold0376 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 17 - 543
Target Start/End: Complemental strand, 4021964 - 4021436
Alignment:
| Q |
17 |
aacctgtgtgagactccaatacaacttaaataatttggtatatcatctgccaaattaaagagaacagggaactgatcgcataaaggttgatccccaagcc |
116 |
Q |
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| T |
4021964 |
aacctgtgtgagactccaatacaacttaaataatttggtatatcatctgccaaattaaagagaacagggaactgatcgcataaaggttgattcccaagcc |
4021865 |
T |
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| Q |
117 |
atagatctctccaaaacaatgtgttttcacttttcaccatttccgactactcacataacttaatttgtaaaccagtttggttcgacttcacatgcctttc |
216 |
Q |
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| T |
4021864 |
atagatctctccaaaacaatgtgttttcacttttcaccgtttccaactactcacttaacttaatttgtaaaccagtttggttcgacttcacatgcctttc |
4021765 |
T |
|
| Q |
217 |
caatagaacataaatatcgccaccataacgagtctatccttcccgactacacggtatctggacggagcaattttcctgaaactggactgtacctatactt |
316 |
Q |
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| T |
4021764 |
caatagaacataaatatcgccaccataacgagtctatccttcccgactacacggtatctggatggagcaattttcctgaaactggactgtacctatactt |
4021665 |
T |
|
| Q |
317 |
tattaacccgaaccaaatagtaccattttccgcaatgcacctccataaccattttcttcgtaacgttaaatgaaataagtacaagttttttacttcgagt |
416 |
Q |
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| T |
4021664 |
tattaacctgaaccaaatagtaccattttccgcaatgcacctccataaccattttcttcgtaactttaaatgaaataagtacaagttttttacttcgagt |
4021565 |
T |
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| Q |
417 |
cctccttcttttgaccgacacaccttctccgaactcacccaattaatcttatttccttccaaaccctctccccaattcat--tgtaaatctttatttaag |
514 |
Q |
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| T |
4021564 |
cctccttcttttgaccgacacaccttctcccaactcacccaattaatcttatttccttccaaaccctctcctcaattcattgtgtaaatctttatttaag |
4021465 |
T |
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| Q |
515 |
tttaggaggttaacattatatatgatctt |
543 |
Q |
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| T |
4021464 |
tttaggaggttaacattatatatgatctt |
4021436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 5190 - 5113
Alignment:
| Q |
185 |
aaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataacgagtctatccttcccga |
262 |
Q |
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| T |
5190 |
aaaccagtttggttccacttcacacacctttcctattgaacataaatcacgccaccataacgagtctaaccttcccga |
5113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 488
Target Start/End: Complemental strand, 4938 - 4892
Alignment:
| Q |
442 |
tctccgaactcacccaattaatcttatttccttccaaaccctctccc |
488 |
Q |
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| T |
4938 |
tctcccaactcacccaattaatcttgtttccttccaatccccctccc |
4892 |
T |
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