View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_low_40 (Length: 226)
Name: NF13711_low_40
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31477250 - 31477031
Alignment:
| Q |
1 |
cattctcaatactttcaattgcattctccaaagcctctaatctttcatgtgaagcctgcaagttttctccattagtaccttcacttaaaagagtgcttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31477250 |
cattctcaatactttcaattgcattctccaaagcctctaatctttcatgtgaagcctgcaagttttctccattagtaccttcacttaaaagagtgcttaa |
31477151 |
T |
|
| Q |
101 |
ggtagcttcaacacacaaaaactcattgacattatatgagttatcttcacatgttataacccctttgtgcatcagtttagccacaaacttccatttagct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31477150 |
ggtagcttcaacacacaaaaactcattgacattatatgagttatcttcacatgttataacccctttgtgcatcagtttagccacaaacttccatttagct |
31477051 |
T |
|
| Q |
201 |
gtctttgactttgatgaaga |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
31477050 |
gtctttgactttgatgaaga |
31477031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31502614 - 31502395
Alignment:
| Q |
1 |
cattctcaatactttcaattgcattctccaaagcctctaatctttcatgtgaagcctgcaagttttctccattagtaccttcacttaaaagagtgcttaa |
100 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31502614 |
cattctcaatactttcaattactttctccaaagcctccaatctttcatgtgcagcctgcatgttttctccattagtaccttcacttaaaagagtgcttaa |
31502515 |
T |
|
| Q |
101 |
ggtagcttcaacacacaaaaactcattgacattatatgagttatcttcacatgttataacccctttgtgcatcagtttagccacaaacttccatttagct |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |||||| ||||| ||||| || | | |
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| T |
31502514 |
ggtagcttcaacacacaaaaactcattgacattatccgagttatcttcacatgttatgactcctttgtgcatcattttagcaacaaatttccacttggtt |
31502415 |
T |
|
| Q |
201 |
gtctttgactttgatgaaga |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
31502414 |
gtctttgactttgatgaaga |
31502395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31467404 - 31467185
Alignment:
| Q |
1 |
cattctcaatactttcaattgcattctccaaagcctctaatctttcatgtgaagcctgcaagttttctccattagtaccttcacttaaaagagtgcttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||| ||| |||| |||||||||||| || |||| |
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| T |
31467404 |
cattctcaatactttcaattgcattctccaaagcctccaatctttcatgtgcagcctgaaacttttcgccaatagtggattcacttaaaagggtatttaa |
31467305 |
T |
|
| Q |
101 |
ggtagcttcaacacacaaaaactcattgacattatatgagttatcttcacatgttataacccctttgtgcatcagtttagccacaaacttccatttagct |
200 |
Q |
| |
|
|||||||| ||||| |||||||||| ||| | ||||||||||||| |||||||| | || |||||||| ||||| | ||| ||| ||||||||| | |
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| T |
31467304 |
agtagcttccacacattgcaactcattgatattttctgagttatcttcaaatgttatagcacccttgtgcattagttttgtcaccaacatccatttagtt |
31467205 |
T |
|
| Q |
201 |
gtctttgactttgatgaaga |
220 |
Q |
| |
|
| ||| |||||||||||||| |
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| T |
31467204 |
gccttagactttgatgaaga |
31467185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 9292377 - 9292419
Alignment:
| Q |
9 |
atactttcaattgcattctccaaagcctctaatctttcatgtg |
51 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
9292377 |
atactttcaattgcattctccaaagcctcaaatctttcatgtg |
9292419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 9301199 - 9301241
Alignment:
| Q |
9 |
atactttcaattgcattctccaaagcctctaatctttcatgtg |
51 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
9301199 |
atactttcaattgcattctccaaagcctcaaatctttcatgtg |
9301241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9331607 - 9331657
Alignment:
| Q |
1 |
cattctcaatactttcaattgcattctccaaagcctctaatctttcatgtg |
51 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
9331607 |
cattctctatactttcaattgcattctccaaagcctcaaatccttcatgtg |
9331657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9351335 - 9351385
Alignment:
| Q |
1 |
cattctcaatactttcaattgcattctccaaagcctctaatctttcatgtg |
51 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
9351335 |
cattctctatactttcaattgcattctccaaagcctcaaatccttcatgtg |
9351385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 9357058 - 9357016
Alignment:
| Q |
9 |
atactttcaattgcattctccaaagcctctaatctttcatgtg |
51 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
9357058 |
atactttcaattgcattctccaaagcctcaaatctttcatgtg |
9357016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 9374180 - 9374138
Alignment:
| Q |
9 |
atactttcaattgcattctccaaagcctctaatctttcatgtg |
51 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
9374180 |
atactttcaattgcattctccaaagcctcaaatctttcatgtg |
9374138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 9287858 - 9287896
Alignment:
| Q |
13 |
tttcaattgcattctccaaagcctctaatctttcatgtg |
51 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
9287858 |
tttcaattgcattctccaaagcctcaaatctttcatgtg |
9287896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 9296984 - 9297026
Alignment:
| Q |
9 |
atactttcaattgcattctccaaagcctctaatctttcatgtg |
51 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
9296984 |
atactttcaattgcattctccaaagcctcaaatctatcatgtg |
9297026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 9304817 - 9304859
Alignment:
| Q |
9 |
atactttcaattgcattctccaaagcctctaatctttcatgtg |
51 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
9304817 |
atactttcaattgcattctcgaaagcctcaaatctttcatgtg |
9304859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 9329435 - 9329393
Alignment:
| Q |
9 |
atactttcaattgcattctccaaagcctctaatctttcatgtg |
51 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
9329435 |
atactttcaactgcattctccaaagcctcaaatctttcatgtg |
9329393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 9349679 - 9349637
Alignment:
| Q |
9 |
atactttcaattgcattctccaaagcctctaatctttcatgtg |
51 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
9349679 |
atactttcaattgcattctccaaagcttcaaatctttcatgtg |
9349637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 9368282 - 9368248
Alignment:
| Q |
13 |
tttcaattgcattctccaaagcctctaatctttca |
47 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9368282 |
tttcaattgcattctccaaagcctcaaatctttca |
9368248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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