View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_low_41 (Length: 223)
Name: NF13711_low_41
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 40279781 - 40279981
Alignment:
| Q |
5 |
atcaatctatctttggcacatgttctgtgtatatctgcatgtttacaaaaatacttcaattgatcaagcttgcagcatcctatcatttgactcaacagca |
104 |
Q |
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|||||||||| |||||||| ||||||||||||||| |||||||| || |||||||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
40279781 |
atcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagca |
40279880 |
T |
|
| Q |
105 |
aaaacaaccaatttatatttctcttctttgtaatcaatggattcattgctttctcttttccacaactctcacagttttctatcataggattcatccattc |
204 |
Q |
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| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||||| ||||| |||||||||||||| |
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| T |
40279881 |
agaacaaccaatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattc |
40279980 |
T |
|
| Q |
205 |
a |
205 |
Q |
| |
|
| |
|
|
| T |
40279981 |
a |
40279981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 40458569 - 40458369
Alignment:
| Q |
5 |
atcaatctatctttggcacatgttctgtgtatatctgcatgtttacaaaaatacttcaattgatcaagcttgcagcatcctatcatttgactcaacagca |
104 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||| |||||||| || |||||||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
40458569 |
atcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagca |
40458470 |
T |
|
| Q |
105 |
aaaacaaccaatttatatttctcttctttgtaatcaatggattcattgctttctcttttccacaactctcacagttttctatcataggattcatccattc |
204 |
Q |
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| T |
40458469 |
agaacaaccaatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattc |
40458370 |
T |
|
| Q |
205 |
a |
205 |
Q |
| |
|
| |
|
|
| T |
40458369 |
a |
40458369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 40284742 - 40284943
Alignment:
| Q |
5 |
atcaatctatctttggcacatgttctgtgtatatctgcatgtttacaaaaatacttcaattgatcaagcttgcagcatcctatcatttgactcaacagca |
104 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||| |||||||| || ||||||||||||||||| |||||||| || ||||||||||||| ||||||| |
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| T |
40284742 |
atcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcgagcttgcaacaccctatcatttgacctaacagca |
40284841 |
T |
|
| Q |
105 |
aaaacaaccaatttatatttctcttctttgtaatcaatggattcattgctttctcttttccacaactctcacagttttctatcataggattcatccattc |
204 |
Q |
| |
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| ||||||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||| |||| ||||| ||||| ||||||||||||||| |
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| T |
40284842 |
agaacaaccaattgatgtttctcttctttgtcatcaatggatgcattgctttctcttttccacaagtctcgcagttcggtatcacaggattcatccattc |
40284941 |
T |
|
| Q |
205 |
ac |
206 |
Q |
| |
|
|| |
|
|
| T |
40284942 |
ac |
40284943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 39600463 - 39600588
Alignment:
| Q |
43 |
atgtttacaaaaatacttcaattgatcaagcttgcagcatcctatcatttgactcaacagcaaaaacaaccaatttatatttctcttctttgtaatcaat |
142 |
Q |
| |
|
|||||| || ||||| ||||| || | ||||||||| || || ||||| |||| ||||| ||||||||||||||| || ||||||||||||| || | | |
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| T |
39600463 |
atgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaaccaattgattgttctcttctttgtgattatt |
39600562 |
T |
|
| Q |
143 |
ggattcattgctttctcttttccaca |
168 |
Q |
| |
|
|||||||| || || |||| |||||| |
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|
| T |
39600563 |
ggattcatagcgttttcttgtccaca |
39600588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 39781500 - 39781385
Alignment:
| Q |
53 |
aaatacttcaattgatcaagcttgcagcatcctatcatttgactcaacagcaaaaacaaccaatttatatttctcttctttgtaatcaatggattcattg |
152 |
Q |
| |
|
||||||||||| || | ||||||||| || || ||||| |||| ||| | ||| ||||||||||| || ||||||||||||| || | ||||||||| | |
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|
| T |
39781500 |
aaatacttcaaatgttgaagcttgcaacacccaatcatctgacccaataacaagaacaaccaattaatggttctcttctttgtgattattggattcatag |
39781401 |
T |
|
| Q |
153 |
ctttctcttttccaca |
168 |
Q |
| |
|
| || |||| |||||| |
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| T |
39781400 |
cattttcttgtccaca |
39781385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 25044394 - 25044476
Alignment:
| Q |
50 |
caaaaatacttcaattgatcaagcttgcagcatcctatcatttgactcaacagcaaaaacaaccaatttatatttctcttctt |
132 |
Q |
| |
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||||||||||||||||| | ||| ||||| || || | |||||| | |||||||| |||||||||||| ||||| ||||||| |
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| T |
25044394 |
caaaaatacttcaattgtttaagattgcaacaacccagcatttgtcccaacagcagaaacaaccaattgatattcttcttctt |
25044476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 25040656 - 25040729
Alignment:
| Q |
50 |
caaaaatacttcaattgatcaagcttgcagcatcctatcatttgactcaacagcaaaaacaaccaatttatatt |
123 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || || ||||| | || || || |||||||||||| ||||| |
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|
| T |
25040656 |
caaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagcaacagaaacaaccaattgatatt |
25040729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 28649871 - 28649944
Alignment:
| Q |
50 |
caaaaatacttcaattgatcaagcttgcagcatcctatcatttgactcaacagcaaaaacaaccaatttatatt |
123 |
Q |
| |
|
||||||||||||||||| | ||| ||||| || || | |||||| | ||||| ||||||||||||||| ||||| |
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|
| T |
28649871 |
caaaaatacttcaattgtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaattaatatt |
28649944 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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