View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13711_low_5 (Length: 575)
Name: NF13711_low_5
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 22 - 562
Target Start/End: Complemental strand, 27762812 - 27762271
Alignment:
| Q |
22 |
catcgccaaaaggggaggaaataattgtggcatcagaaattctagaagagacaaatatttcttggctcaagaggctgaactgccaaggataaaactgact |
121 |
Q |
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| T |
27762812 |
catcgccaaaaggggaggaaataattgtggcatcagaaattctagaagagacaaatatttcttggctcaagaggctgaactgccaaggataaaactgact |
27762713 |
T |
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| Q |
122 |
ccaaaataagtaaattttgctcaagttgttgaaccatgccaacatttttaatattgttttgaagcacataatcagttacattaggaaatgcaaattgaaa |
221 |
Q |
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| T |
27762712 |
ccaaaataagtaaattttgctcaagttgttgaaccatgccaacattgtcaatattgttttgaagcacataatcagttacattaggaaatgcaaattgaaa |
27762613 |
T |
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| Q |
222 |
tgaggtgcttgtatttggattctcattttgtattgttgtctccatcgcatgttgttgtgtca-cttgcaactttttattaggggctaccacatctatagg |
320 |
Q |
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| T |
27762612 |
tgaggtgcttgtatttggattctcattttgtattgttgtctccattgcatgtttttgtgtcatcttgcaactttttattaggggctaccacatctatagg |
27762513 |
T |
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| Q |
321 |
tttctcaacaatagccaacgattgctcctctaagggcttttcaactataaccaatggttgctcctctaatggtttttcaaaattaaccattggttgcttg |
420 |
Q |
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| T |
27762512 |
tttctcaacaatagccaacgattgctcctctaagggcttctcaactataaccaatggttgctcctctaatggtttttcaaaattaaccattggttgcttg |
27762413 |
T |
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| Q |
421 |
gtttgaggattcaaagtgttagtacaaattgctatggtactttctttggtgcttgctattctttgaccttcaaagctttatttgtatgatggatccattt |
520 |
Q |
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| T |
27762412 |
gtttgaggattcaaagtgttggtacaaattgctatggtactttctttggtgcttgctattctttaaccttcaaagctttatttgtatgatggatccattt |
27762313 |
T |
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| Q |
521 |
tccatttccaacagaatgccctatgatttgacaatggtaaca |
562 |
Q |
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| T |
27762312 |
tccatttctaacagaatgccctatgatttgacaatggtaaca |
27762271 |
T |
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