View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13711_low_9 (Length: 446)
Name: NF13711_low_9
Description: NF13711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13711_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 7753254 - 7752838
Alignment:
| Q |
18 |
caacgaacgccattcagtggcaaacaaatattcaaatttagaaacacttcattttagcgaggctaatctatcagatgaagatgttaatgccattattgaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7753254 |
caacgaacgccattcagtggcaaacaaatattcaaatttagaagcacttcattttagcgaggctaatctatcagatgaagatgttaatgccattattgaa |
7753155 |
T |
|
| Q |
118 |
aattttccaaaactggcatacttgaaagtttcacacaatggttttgtatccctcccaaattgcatcagaggatctatgcacttgaaaagtcttgatgtga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7753154 |
aattttccaaaactggcatacttgaaagtttcacacaatggttttgtatccctcccaaattgcatcagaggatctatgcacttgaaaagtcttgatgtga |
7753055 |
T |
|
| Q |
218 |
gtttttgcaggaaccttacggaagtttcagaacttccattaagtattcagaagatcgatgcaagacactgtaaatccttaactttagatgcatcaagtgt |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7753054 |
gtttttgcagaaaccttacggaagtttcagaacttccattaagtattcagaagatcgatgcaagacactgtaaatccttaactttagatgcatcaagtgt |
7752955 |
T |
|
| Q |
318 |
gctttggtccaaggttttacttctgtctgcattatttagataatagaaataccatcaatctgtatgtagtatgttgatgcaaacacactaatgtcatttg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7752954 |
gctttggtccaaggttttacttctgtctgcattatttagataatagaaataccatcaatctgtatgtagtatgttgatgcaaacacactaatgtcatttg |
7752855 |
T |
|
| Q |
418 |
ttttgacttcacaggtt |
434 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7752854 |
ttttgacttcacaggtt |
7752838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 25 - 355
Target Start/End: Complemental strand, 7760317 - 7759987
Alignment:
| Q |
25 |
cgccattcagtggcaaacaaatattcaaatttagaaacacttcattttagcgaggctaatctatcagatgaagatgttaatgccattattgaaaattttc |
124 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7760317 |
cgccattcagtggcaaacggctatccaaatgtagaaacacttcattttagtgaggcgaatctatcatatgaagatgttaatgccattattgaaaattttc |
7760218 |
T |
|
| Q |
125 |
caaaactggcatacttgaaagtttcacacaatggttttgtatccctcccaaattgcatcagaggatctatgcacttgaaaagtcttgatgtgagtttttg |
224 |
Q |
| |
|
||||||||| | ||||||||||||| |||||||| |||||| |||||||||||| ||||||| ||||| |||||||||||| |||||||||||| || || |
|
|
| T |
7760217 |
caaaactggaagacttgaaagtttcgcacaatgggtttgtagccctcccaaattacatcagaagatctctgcacttgaaaaatcttgatgtgagcttctg |
7760118 |
T |
|
| Q |
225 |
caggaaccttacggaagtttcagaacttccattaagtattcagaagatcgatgcaagacactgtaaatccttaactttagatgcatcaagtgtgctttgg |
324 |
Q |
| |
|
|||||| ||||| ||| || |||||||||| | |||| ||||||| || ||||||||||||||| ||||||||||| || |||| |||| | || ||| |
|
|
| T |
7760117 |
caggaatcttacagaaattccagaacttccctcaagtgttcagaaaatagatgcaagacactgtcaatccttaactcctgaggcattaagttttctctgg |
7760018 |
T |
|
| Q |
325 |
tccaaggttttacttctgtctgcattattta |
355 |
Q |
| |
|
|| |||||||||||||| ||| |||||||| |
|
|
| T |
7760017 |
tctaaggttttacttctttctttattattta |
7759987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 50 - 400
Target Start/End: Complemental strand, 7836725 - 7836374
Alignment:
| Q |
50 |
caaatttagaaacacttcattttagcgaggctaatctatcagatgaagatgttaatgccattattgaaaattttccaaaactggcatacttgaaagtttc |
149 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
7836725 |
caaatatagaaacacttcattttagcggagctaatctatcaaatgacgatgttaatgccattattgaaaattttccaaaactggaagacttgaaagtttt |
7836626 |
T |
|
| Q |
150 |
acacaatggttttgtatccctcccaaattgcatcagaggatctatgcacttgaaaagtcttgatgtgagtttttgcaggaaccttacggaagtttcagaa |
249 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||| ||| ||||| ||| || | ||| |
|
|
| T |
7836625 |
tcacaattggtttgtatccctcccaaattgcatcagaggatctttgcacttaaaaagtcttgacgtgagcttttgcaagaatcttacagaaattccggaa |
7836526 |
T |
|
| Q |
250 |
cttccattaagtattcagaagatcgatgcaagacactgtaaatccttaactttagatgcatcaagtgtgctttggtccaaggttttacttctgtctgcat |
349 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| ||||| |||||||||||| | | ||||| ||| | || ||||| | ||||| |||||| ||| ||| |
|
|
| T |
7836525 |
cttccattaaatattcagaagatagatgcaagatactgtcaatccttaacttcaaaggcatctagtattctctggtctatggtttgacttctttctccat |
7836426 |
T |
|
| Q |
350 |
tatttagataatagaa-ataccatcaatctgtatgtagtatgttgatgcaaa |
400 |
Q |
| |
|
|||||| |||| | || |||| |||||||| || || |||||||||||||| |
|
|
| T |
7836425 |
tatttacataacacaagatactatcaatctttaaatactatgttgatgcaaa |
7836374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 297
Target Start/End: Original strand, 7830107 - 7830336
Alignment:
| Q |
68 |
attttagcgaggctaatctatcagatgaagatgttaatgccattattgaaaattttccaaaactggcatacttgaaagtttcacacaatggttttgtatc |
167 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||| || | ||| |||||| ||||||||| ||| ||| ||||| || |||||| ||| |||| ||| |
|
|
| T |
7830107 |
atttcagcaaggctaatctatcatgtgaagatcttcacataattcttgaaatatttccaaaattggaatatttgaatgtgtcacacgatgaatttgcatc |
7830206 |
T |
|
| Q |
168 |
cctcccaaattgcatcagaggatctatgcacttgaaaagtcttgatgtgagtttttgcaggaaccttacggaagtttcagaacttccattaagtattcag |
267 |
Q |
| |
|
||||||| ||||||| ||||||| |||| |||||| ||||||| | ||||||||| |||| |||| ||| || || ||||||||| |||||||||| |
|
|
| T |
7830207 |
cctcccagtatgcatcaaaggatctttgcaattgaaagttcttgatataagtttttgccggaatcttatggacattccacaacttccatcaagtattcag |
7830306 |
T |
|
| Q |
268 |
aagatcgatgcaagacactgtaaatcctta |
297 |
Q |
| |
|
|| | ||||||||| | ||| |||||||| |
|
|
| T |
7830307 |
aaagtagatgcaagatattgtcaatcctta |
7830336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 337
Target Start/End: Original strand, 7892764 - 7892905
Alignment:
| Q |
196 |
cacttgaaaagtcttgatgtgagtttttgcaggaaccttacggaagtttcagaacttccattaagtattcagaagatcgatgcaagacactgtaaatcct |
295 |
Q |
| |
|
|||||||||||| ||||||| | |||| |||||| ||||| ||||||| |||||||| |||| || ||||||| |||| |||||| ||| |||||| |
|
|
| T |
7892764 |
cacttgaaaagtattgatgtcaagtttttcaggaatcttacaaaagtttcgacacttccatcaagtgtttagaagatagatggaagacattgtcaatcct |
7892863 |
T |
|
| Q |
296 |
taactttagatgcatcaagtgtgctttggtccaaggttttac |
337 |
Q |
| |
|
|| |||||||||||||| ||| ||| | ||| |||||||||| |
|
|
| T |
7892864 |
tatctttagatgcatcatgtgggctcttgtcaaaggttttac |
7892905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University