View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13712_high_1_N (Length: 543)

Name: NF13712_high_1_N
Description: NF13712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13712_high_1_N
NF13712_high_1_N
[»] chr4 (6 HSPs)
chr4 (71-543)||(20425580-20426052)
chr4 (71-184)||(20456065-20456178)
chr4 (315-383)||(42448932-42449000)
chr4 (295-404)||(9594622-9594731)
chr4 (344-413)||(54295973-54296042)
chr4 (11-39)||(20426085-20426113)
[»] chr1 (3 HSPs)
chr1 (227-428)||(51869090-51869291)
chr1 (119-195)||(51869323-51869399)
chr1 (295-383)||(19226216-19226304)
[»] chr2 (6 HSPs)
chr2 (102-394)||(44913178-44913458)
chr2 (102-427)||(44919174-44919487)
chr2 (76-195)||(44938441-44938560)
chr2 (299-383)||(29353303-29353387)
chr2 (313-383)||(34324469-34324538)
chr2 (295-368)||(7429859-7429932)
[»] chr8 (11 HSPs)
chr8 (113-212)||(15338845-15338944)
chr8 (113-212)||(15427910-15428009)
chr8 (113-212)||(15519214-15519313)
chr8 (313-383)||(4027041-4027111)
chr8 (313-404)||(31135864-31135955)
chr8 (272-336)||(12646273-12646337)
chr8 (321-390)||(22944619-22944688)
chr8 (272-331)||(12651410-12651469)
chr8 (348-394)||(15339071-15339117)
chr8 (348-394)||(15428136-15428182)
chr8 (348-394)||(15519440-15519486)
[»] chr5 (13 HSPs)
chr5 (244-387)||(30650704-30650847)
chr5 (339-393)||(39725451-39725505)
chr5 (324-429)||(37511979-37512084)
chr5 (299-387)||(31777051-31777138)
chr5 (324-404)||(31788624-31788704)
chr5 (115-184)||(31777247-31777316)
chr5 (344-393)||(40544245-40544294)
chr5 (326-388)||(21698733-21698795)
chr5 (126-188)||(30650897-30650959)
chr5 (317-383)||(42261493-42261559)
chr5 (314-404)||(42777097-42777187)
chr5 (344-393)||(42003166-42003215)
chr5 (297-393)||(16487574-16487670)
[»] chr7 (1 HSPs)
chr7 (313-383)||(30249012-30249082)
[»] chr6 (3 HSPs)
chr6 (285-414)||(29011968-29012097)
chr6 (285-413)||(32745715-32745843)
chr6 (272-366)||(23216815-23216909)
[»] scaffold0134 (1 HSPs)
scaffold0134 (272-366)||(17097-17191)
[»] scaffold0129 (2 HSPs)
scaffold0129 (147-189)||(9770-9812)
scaffold0129 (353-429)||(18043-18119)
[»] scaffold0068 (1 HSPs)
scaffold0068 (326-388)||(15115-15177)
[»] scaffold0831 (1 HSPs)
scaffold0831 (296-332)||(2126-2162)


Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 71 - 543
Target Start/End: Complemental strand, 20426052 - 20425580
Alignment:
Q  71 caaagagttccggtaataatatcacaatcaataaaatcaaagaaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacc 170  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20426052 caaagagttccggcaataatatcacaatcaataaaatcaaagaaagggttttcctcttgaaatggatttggtaagtctaatttgactcgattctcaaacc 20425953  T
Q  171 tctcaccagaaagtaaatagaaagagtaacgaatagaataatgagtctcgataaactgatataagatgacagatgtatcattgtagtaagagtgagactt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20425952 tctcaccagaaagtaaatagaaagagtaacgaatagaataatgagtctcgataaactgatataagatgagagatgtatcattgtagtaagagtgagactt 20425853  T
Q  271 tgatatgaagttagtgcgaaactcgttcatgaaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaa 370  Q
     |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||||||||||||||||||||    
T  20425852 agatatgcagttagtgcgaaactcattcatgaaatgagagtcttcaaataaaagagaccatgcattgcatacgcattcaaatcgtttcaaagattttaaa 20425753  T
Q  371 ggaagttttgacagaatagagaatgaaatatcataaggaatatgattcgtaaccttttcttccattacagattcggccatctcaacaatcaaatgtcgtt 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  20425752 ggaagttttgacagaatagagaatgaaatatcataaggaatatgattcgtaaccttttcttccattacagcttcagccatctcaacaatcaaatgtcgtt 20425653  T
Q  471 ggaagagtgcaaacctctcgtaacaacttccgagatcgtgagggaaaatatgaaactaacttgctacctacct 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20425652 ggaagagtgcaaacctctcgtaacaacttccgagatcgtgagggaaaatatgaaactaacttgctacctacct 20425580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 20456065 - 20456178
Alignment:
Q  71 caaagagttccggtaataatatcacaatcaataaaatcaaagaaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacc 170  Q
    |||||||||||||||||||||| | |||||| ||||||||||||| |||||||||| ||| || |||||||||| ||||||||||||| ||||||||||     
T  20456065 caaagagttccggtaataatattagaatcaacaaaatcaaagaaatggttttcctcgtgacatagatttggtaagtctaatttgactctattctcaaact 20456164  T
Q  171 tctcaccagaaagt 184  Q
    | ||| ||||||||    
T  20456165 tatcatcagaaagt 20456178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 42449000 - 42448932
Alignment:
Q  315 caaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgaca 383  Q
    ||||||| ||||||||| ||||| |||| |||| |||||  ||||| |||||||| |||||||||||||    
T  42449000 caaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgaca 42448932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 9594622 - 9594731
Alignment:
Q  295 gttcatgaaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaat 394  Q
    ||||||||| |||  || |||| |||| |||||||||| ||||   |||||||||||||| || |||||||| | ||| | ||| || ||||| |||||     
T  9594622 gttcatgaagtgatcgttttcacataagagagaccatgctttgcgaacacattcaaatcgcttaaaagatttaataggtaatttagatagaatggagaag 9594721  T
Q  395 gaaatatcat 404  Q
    ||||||||||    
T  9594722 gaaatatcat 9594731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 413
Target Start/End: Original strand, 54295973 - 54296042
Alignment:
Q  344 cattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaatgaaatatcataaggaatat 413  Q
    |||||||||||||| |||||||| | ||| |||||||| | ||| ||||| |||||||||| ||| ||||    
T  54295973 cattcaaatcgtttaaaagatttaagaggcagttttgataaaatggagaaggaaatatcatcaggtatat 54296042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 20426113 - 20426085
Alignment:
Q  11 aatgaccttagattcatgggtagctgggt 39  Q
    |||||||||||||||||||||||||||||    
T  20426113 aatgaccttagattcatgggtagctgggt 20426085  T

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Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 227 - 428
Target Start/End: Complemental strand, 51869291 - 51869090
Alignment:
Q  227 tgatataagatgacagatgtatcattgtagtaagagtgagactttgatatgaagttagtgcgaaactcgttcatgaaatgagagtcttcaaataaaagag 326  Q
    ||||| |||| || ||||| ||||||| |||| |||||||   | |||||||| |||||||  || | |||||||||||||| |||||||||||| ||||    
T  51869291 tgatacaagaggagagatgcatcattggagtatgagtgaggaatagatatgaaattagtgcagaagttgttcatgaaatgagggtcttcaaataagagag 51869192  T
Q  327 accatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaatgaaatatcataaggaatatgattcgtaacctt 426  Q
    |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| || |||||||| || || ||  || || |||||| |||||||    
T  51869191 accatggtttgtatgcacatccaaatcgtttcaaagattttaacggaagttttgacaaaacagagaatgcaagatgattgggtatgtgattcctaacctt 51869092  T
Q  427 tt 428  Q
    ||    
T  51869091 tt 51869090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 51869399 - 51869323
Alignment:
Q  119 ttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaatagaaaga 195  Q
    ||||||| ||||||||||||||| |  ||||||||||||| ||||||| ||||||||||| | ||| |||| |||||    
T  51869399 ttttcctattgaaatggatttggaacatctaatttgactccattctcatacctctcaccacatagtgaatacaaaga 51869323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 383
Target Start/End: Original strand, 19226216 - 19226304
Alignment:
Q  295 gttcatgaaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgaca 383  Q
    ||||||||||| ||||| |||||| ||||||| ||| | |||| |||||||   |||||| || | |||||| ||||| ||||||||||    
T  19226216 gttcatgaaataagagttttcaaacaaaagagtccacgatttgcatacacaagtaaatcgatttacagatttcaaaggtagttttgaca 19226304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 102 - 394
Target Start/End: Original strand, 44913178 - 44913458
Alignment:
Q  102 taaaatcaaagaaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaatagaaagagtaacg 201  Q
    |||||| |||||||| ||||||||||||||| |||||||| || |||||||| ||| |||||||| |||| ||||||||||| |||||| ||||| || |    
T  44913178 taaaattaaagaaagagttttcctcttgaaacggatttggaaagtctaattttacttgattctcatacctatcaccagaaagcaaataggaagagcaatg 44913277  T
Q  202 aatagaataatgagtctcgataaactgatataagatgacagatgtatcattgtagtaagagtgagactttgatatgaagttagtgcgaaactcgttcatg 301  Q
    ||||||||||| |    ||| || || |||||||| ||||||| |||||||| | |||||| |||   ||||||| || ||||||||            |    
T  44913278 aatagaataatcatgggcgacaacctcatataagaggacagatatatcattgcaataagagggaggaattgatataaaattagtgcg------------g 44913365  T
Q  302 aaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaat 394  Q
    |||  ||||| ||||||||| | || |||||||||  |||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  44913366 aaacaagagttttcaaataagaaagtccatggtttacatacgcatccaaatcgttttaaagattttaaagaaagttttgacagaatagagaat 44913458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 102 - 427
Target Start/End: Original strand, 44919174 - 44919487
Alignment:
Q  102 taaaatcaaagaaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaatagaaagagtaacg 201  Q
    ||||||||||||||  |||||||||||||| ||||| ||| || |||||||| ||| |||||||| |||| ||||||||||| |||||| ||||| ||||    
T  44919174 taaaatcaaagaaaaagttttcctcttgaattggatctggaaagtctaattttactagattctcatacctatcaccagaaagcaaataggaagagcaacg 44919273  T
Q  202 aatagaataatgagtctcgataaactgatataagatgacagatgtatcattgtagtaagagtgagactttgatatgaagttagtgcgaaactcgttcatg 301  Q
    ||| ||||||| |    ||| || || |||||||| || |||| ||||  || | | ||||||||   ||||||| || ||||||||            |    
T  44919274 aattgaataatcatgggcgacaacctcatataagaagatagatatatcggtgcaatcagagtgaggaattgatataaaattagtgcg------------g 44919361  T
Q  302 aaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaatgaaatat 401  Q
    ||   ||||| ||||||||| |||| ||||| |||   ||||||||||||| | || ||||||||||||||||||||||||||||||||||||| || ||    
T  44919362 aagcaagagttttcaaataagagagcccatgatttacgtacacattcaaatggcttaaaagattttaaaggaagttttgacagaatagagaatgcaagat 44919461  T
Q  402 cataaggaatatgattcgtaaccttt 427  Q
    |||  || || |||||| ||||||||    
T  44919462 cattgggtatgtgattcctaaccttt 44919487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 44938441 - 44938560
Alignment:
Q  76 agttccggtaataatatcacaatcaataaaatcaaagaaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctca 175  Q
    ||||||||||||| |||||||| ||  |||||||| |||||||||||||||||||||  | || || || ||||||||||||||||||||| ||||| ||    
T  44938441 agttccggtaatagtatcacaaccataaaaatcaatgaaagggttttcctcttgaaactggttgggaaagtctaatttgactcgattctcatacctcgca 44938540  T
Q  176 ccagaaagtaaatagaaaga 195  Q
    ||||||||| ||||||||||    
T  44938541 ccagaaagtgaatagaaaga 44938560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 383
Target Start/End: Original strand, 29353303 - 29353387
Alignment:
Q  299 atgaaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgaca 383  Q
    ||||||| || || ||||||||| |||||||||| ||| | ||| ||| |||| || ||||||||||||||||||||||||||||    
T  29353303 atgaaattagggttttcaaataagagagaccatgttttatttacgcatccaaaacgcttcaaagattttaaaggaagttttgaca 29353387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 34324538 - 34324469
Alignment:
Q  313 ttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgaca 383  Q
    ||||||||| |||||||||| ||||| ||||||| |||| |||| ||||||||||||||||| ||| ||||    
T  34324538 ttcaaataagagagaccatgttttgtgtacacatccaaaacgtt-caaagattttaaaggaactttcgaca 34324469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 7429859 - 7429932
Alignment:
Q  295 gttcatgaaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagatttta 368  Q
    |||||||||||||| ||||| |||||| |  | ||||| |||| |||| ||| ||||||| |||||||||||||    
T  7429859 gttcatgaaatgagggtcttgaaataagatggcccatgatttgcatacgcatccaaatcgcttcaaagatttta 7429932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 15338845 - 15338944
Alignment:
Q  113 aaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaatagaaagagtaacgaatagaataat 212  Q
    |||||||| |||||||||||||||||||| || |||||||||||| |||||||| |||||||| |||||||||||||||||||  || ||| ||||||||    
T  15338845 aaagggttgtcctcttgaaatggatttggaaagtctaatttgacttgattctcatacctctcatcagaaagtaaatagaaagaacaatgaagagaataat 15338944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 15427910 - 15428009
Alignment:
Q  113 aaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaatagaaagagtaacgaatagaataat 212  Q
    |||||||| |||||||||||||||||||| || |||||||||||| |||||||| |||||||| |||||||||||||||||||  || ||| ||||||||    
T  15427910 aaagggttgtcctcttgaaatggatttggaaagtctaatttgacttgattctcatacctctcatcagaaagtaaatagaaagaacaatgaagagaataat 15428009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 15519214 - 15519313
Alignment:
Q  113 aaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaatagaaagagtaacgaatagaataat 212  Q
    |||||||| |||||||||||||||||||| || |||||||||||| |||||||| |||||||| |||||||||||||||||||  || ||| ||||||||    
T  15519214 aaagggttgtcctcttgaaatggatttggaaagtctaatttgacttgattctcatacctctcatcagaaagtaaatagaaagaacaatgaagagaataat 15519313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 4027111 - 4027041
Alignment:
Q  313 ttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgaca 383  Q
    ||||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||    
T  4027111 ttcaaataagagagaccatggtttgtgtacacatccaaaacgtttcaaagattttaaaggaagtttcgaca 4027041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 313 - 404
Target Start/End: Original strand, 31135864 - 31135955
Alignment:
Q  313 ttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaatgaaatatcat 404  Q
    ||||||||||||||||||||||||| |||||||| ||||||| |||||  |||||||||| |  || || | ||||||||| ||||||||||    
T  31135864 ttcaaataaaagagaccatggtttgcatacacatgcaaatcgcttcaagaattttaaaggcaacttggagataatagagaaggaaatatcat 31135955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 12646337 - 12646273
Alignment:
Q  272 gatatgaagttagtgcgaaactcgttcatgaaatgagagtcttcaaataaaagagaccatggttt 336  Q
    |||||||| |||||||| |||  |||||||||||||| || || |||||||||||||||||||||    
T  12646337 gatatgaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagaccatggttt 12646273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 22944688 - 22944619
Alignment:
Q  321 aaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaataga 390  Q
    |||||| ||||| ||||| |||||||| |||||||||||  || |||||||||||||| |||| ||||||    
T  22944688 aaagagcccatgatttgtgtacacatttaaatcgtttcatggactttaaaggaagtttcgacaaaataga 22944619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 12651469 - 12651410
Alignment:
Q  272 gatatgaagttagtgcgaaactcgttcatgaaatgagagtcttcaaataaaagagaccat 331  Q
    |||||||| |||||||| |||  |||||||||||||| || || ||||||||||||||||    
T  12651469 gatatgaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagaccat 12651410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 15339071 - 15339117
Alignment:
Q  348 caaatcgtttcaaagattttaaaggaagttttgacagaatagagaat 394  Q
    ||||||| ||||||| |||||||| ||||||||||| ||||||||||    
T  15339071 caaatcgcttcaaaggttttaaagaaagttttgacaaaatagagaat 15339117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 15428136 - 15428182
Alignment:
Q  348 caaatcgtttcaaagattttaaaggaagttttgacagaatagagaat 394  Q
    ||||||| ||||||| |||||||| ||||||||||| ||||||||||    
T  15428136 caaatcgcttcaaaggttttaaagaaagttttgacaaaatagagaat 15428182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 15519440 - 15519486
Alignment:
Q  348 caaatcgtttcaaagattttaaaggaagttttgacagaatagagaat 394  Q
    ||||||| ||||||| |||||||| ||||||||||| ||||||||||    
T  15519440 caaatcgcttcaaaggttttaaagaaagttttgacaaaatagagaat 15519486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 387
Target Start/End: Complemental strand, 30650847 - 30650704
Alignment:
Q  244 tgtatcattgtagtaagagtgagactttgatatgaagttagtgcgaaactcgttcatgaaatgagagtcttcaaataaaagagaccatggtttgtataca 343  Q
    ||||||||  |||||||||||||   | |||||||| |||||||| |||  | | ||||||| ||| | ||||||||| |||||||||| ||| | ||||    
T  30650847 tgtatcatcatagtaagagtgaggaatagatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctttaca 30650748  T
Q  344 cattcaaatcgtttcaaagattttaaaggaagttttgacagaat 387  Q
    ||| |||| ||||| ||||||||||||||||||||||| |||||    
T  30650747 catccaaaacgttttaaagattttaaaggaagttttgatagaat 30650704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 39725451 - 39725505
Alignment:
Q  339 atacacattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaa 393  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  39725451 atacacattcaaatcgcttcaaagatttgaaaggaagttttgacagaatagagaa 39725505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 429
Target Start/End: Complemental strand, 37512084 - 37511979
Alignment:
Q  324 gagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaatgaaatatcataaggaatatgattcgtaac 423  Q
    ||||||||| |||| ||||| |||||||||||||||||||||| | ||| |||||||| | ||| ||||| | ||| ||||   ||||||| ||| ||||    
T  37512084 gagaccatgatttgcatacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaatgtcatcgtgaatatggttcctaac 37511985  T
Q  424 cttttc 429  Q
    ||||||    
T  37511984 cttttc 37511979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 387
Target Start/End: Complemental strand, 31777138 - 31777051
Alignment:
Q  299 atgaaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaat 387  Q
    ||||||| ||||| ||||||||| |||||||||| ||| | ||||||| |||| || || ||||||||||| ||||||||||| |||||    
T  31777138 atgaaataagagttttcaaataagagagaccatgttttctttacacatccaaa-cgctttaaagattttaatggaagttttgatagaat 31777051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 404
Target Start/End: Complemental strand, 31788704 - 31788624
Alignment:
Q  324 gagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaatgaaatatcat 404  Q
    ||||||||| ||||  ||| ||||||||||||||||||||||| |  || |||||||| ||||||||||| | ||||||||    
T  31788704 gagaccatgatttgcgtacgcattcaaatcgtttcaaagatttaatggggagttttgatagaatagagaaggcaatatcat 31788624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 31777316 - 31777247
Alignment:
Q  115 agggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagt 184  Q
    |||||| ||| |||||||||||||||| |  |  ||||||| || |||||||||||||||||||||||||    
T  31777316 agggttctccacttgaaatggatttggcatatggaatttgagtctattctcaaacctctcaccagaaagt 31777247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 40544294 - 40544245
Alignment:
Q  344 cattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaa 393  Q
    ||||||||||||||||||||||| | ||| |||||||| |||||||||||    
T  40544294 cattcaaatcgtttcaaagatttaatagggagttttgatagaatagagaa 40544245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 21698795 - 21698733
Alignment:
Q  326 gaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaata 388  Q
    |||||||  |||| ||||||||||||||| ||||||||||| |||| |||||| || ||||||    
T  21698795 gaccatgacttgtttacacattcaaatcgcttcaaagatttaaaagaaagtttggaaagaata 21698733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 30650959 - 30650897
Alignment:
Q  126 cttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaat 188  Q
    |||||||||||||||| |  |  ||||||| || ||||||||||||||||||||||||| |||    
T  30650959 cttgaaatggatttggcatatggaatttgagtctattctcaaacctctcaccagaaagtgaat 30650897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 42261559 - 42261493
Alignment:
Q  317 aataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgaca 383  Q
    ||||| |||||||||| |||| ||||||||  ||| || ||||| ||||||||||| ||||||||||    
T  42261559 aataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgaca 42261493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 404
Target Start/End: Complemental strand, 42777187 - 42777097
Alignment:
Q  314 tcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaatgaaatatcat 404  Q
    |||||||| |||||||||| |||| | |||||||||||||||||    ||||| | ||| | |||||| ||||||||||| | ||||||||    
T  42777187 tcaaataagagagaccatgatttgcacacacattcaaatcgtttggttgatttaataggtaattttgagagaatagagaaagcaatatcat 42777097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 42003166 - 42003215
Alignment:
Q  344 cattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaa 393  Q
    ||||||||||||| ||||||||| | ||||||||| || |||||||||||    
T  42003166 cattcaaatcgttccaaagatttgagaggaagtttggagagaatagagaa 42003215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 393
Target Start/End: Original strand, 16487574 - 16487670
Alignment:
Q  297 tcatgaaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaatagagaa 393  Q
    |||||||||| | ||  ||||||||||| ||||||| ||||| ||| ||| |||| |  ||||||||||| | ||| |||||||| |||| ||||||    
T  16487574 tcatgaaatgtgggttatcaaataaaagcgaccatgatttgtgtacgcatccaaacctcttcaaagatttgataggtagttttgagagaagagagaa 16487670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 30249082 - 30249012
Alignment:
Q  313 ttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgaca 383  Q
    ||||||||| |||||||||| ||||| | |||||||||| || || |||||||||||||||||||||||||    
T  30249082 ttcaaataagagagaccatgttttgtgtgcacattcaaaacgctttaaagattttaaaggaagttttgaca 30249012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 414
Target Start/End: Complemental strand, 29012097 - 29011968
Alignment:
Q  285 tgcgaaactcgttcatgaaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacag 384  Q
    ||||||||  ||||||||||||||  | |||||| || |||||||||| ||||   ||| |||| ||||||||||| ||||  |||||||||||||| ||    
T  29012097 tgcgaaacatgttcatgaaatgagtattttcaaacaagagagaccatgatttgcgaacagattcgaatcgtttcaacgattgcaaaggaagttttgatag 29011998  T
Q  385 aatagagaatgaaatatcataaggaatatg 414  Q
    |||||||||   |||||||| ||| |||||    
T  29011997 aatagagaagtgaatatcatcaggtatatg 29011968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 413
Target Start/End: Original strand, 32745715 - 32745843
Alignment:
Q  285 tgcgaaactcgttcatgaaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacag 384  Q
    ||||||||  ||||||||||||||  | |||| |||| |||||||||| ||||   || |||||||||||||| |||||||| | ||| |||||||| ||    
T  32745715 tgcgaaacatgttcatgaaatgagtattttcagataagagagaccatgatttgcgaacgcattcaaatcgtttaaaagatttaagaggtagttttgatag 32745814  T
Q  385 aatagagaatgaaatatcataaggaatat 413  Q
     || ||||| | |||||||| ||| ||||    
T  32745815 gatggagaaggcaatatcatcaggtatat 32745843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 366
Target Start/End: Original strand, 23216815 - 23216909
Alignment:
Q  272 gatatgaagttagtgcgaaactcgttcatgaaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattt 366  Q
    |||| ||||||| ||||||||  ||||||||||||||| |  |||| ||| |||||||||| ||||   |||||||||||||  |||||||||||    
T  23216815 gataagaagttattgcgaaacatgttcatgaaatgagaattatcaattaagagagaccatgatttgcgaacacattcaaatctcttcaaagattt 23216909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 366
Target Start/End: Original strand, 17097 - 17191
Alignment:
Q  272 gatatgaagttagtgcgaaactcgttcatgaaatgagagtcttcaaataaaagagaccatggtttgtatacacattcaaatcgtttcaaagattt 366  Q
    |||| ||| ||| ||||||||| ||||||||||| ||| |  |||| ||| |||||||||| |||| | || ||||||||||  |||||||||||    
T  17097 gataagaaattattgcgaaacttgttcatgaaataagaattatcaattaagagagaccatgatttgcaaacgcattcaaatctcttcaaagattt 17191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 9812 - 9770
Alignment:
Q  147 ctaatttgactcgattctcaaacctctcaccagaaagtaaata 189  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  9812 ctaatttgactttattctcaaacctctcaccagaaagcaaata 9770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 18043 - 18119
Alignment:
Q  353 cgtttcaaagattttaaaggaagttttgacagaatagagaatgaaatatcataaggaatatgattcgtaaccttttc 429  Q
    |||||||||||||| | ||| ||||| |||||||| || |||| || ||||| | ||||||||||  ||||||||||    
T  18043 cgtttcaaagatttaagaggcagtttggacagaatggaaaatgcaagatcatcatgaatatgattgctaaccttttc 18119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 388
Target Start/End: Original strand, 15115 - 15177
Alignment:
Q  326 gaccatggtttgtatacacattcaaatcgtttcaaagattttaaaggaagttttgacagaata 388  Q
    |||||||  |||| ||||||||||||||| ||||||||||| |||| |||||| || ||||||    
T  15115 gaccatgacttgtttacacattcaaatcgcttcaaagatttaaaagaaagtttggaaagaata 15177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 2126 - 2162
Alignment:
Q  296 ttcatgaaatgagagtcttcaaataaaagagaccatg 332  Q
    |||||||||||||  ||||||||||||||||||||||    
T  2126 ttcatgaaatgaggatcttcaaataaaagagaccatg 2162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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