View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13712_high_4 (Length: 367)
Name: NF13712_high_4
Description: NF13712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13712_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 20165152 - 20164782
Alignment:
| Q |
1 |
caaacatcacaaacaactcttccacgaatttcaccggtccaaccacttacactcaaaacaaacaccatcatcaacaatacaatcaattccactatcatct |
100 |
Q |
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| T |
20165152 |
caaacatcacaaacaactcttccacgaatttcaccagtccaaccacttacactcaaaacaaacaccatcatcaacaatacaatcaattccactatcatct |
20165053 |
T |
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| Q |
101 |
tctgcttcattgcttccattgtcaaaactc-nnnnnnnnnnnnnnnnnncgcactttctcgaataacactgattttgcgcttatgggc------------ |
187 |
Q |
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| T |
20165052 |
tctgcttcattgcttccattgtcaaaactcaaaaaacacacaaaaaaaccgcactttctcgaataacactgattttgcgcttatgggctgtttttgattt |
20164953 |
T |
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| Q |
188 |
---tgttttccaccgacactcgctgaatcactgagtctaaca------cacgagtcaaaccaaaattttctgtagggacaaacttgtcattttgaaaagt |
278 |
Q |
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|||||||||||||||| | ||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20164952 |
tgatgttttccaccgacacccactgaaccactgagtctaacacacgatcacgagtcaaaccaaatttttctgtagggacaaacttgtcattttgaaaagt |
20164853 |
T |
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| Q |
279 |
atcaagggcaaatttggaaaatcatctccatgttttgtcctataaataccaaccaaaaccttcataccaca |
349 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20164852 |
atcaagggtaaatttggaaaatcatctccatgttttgtcctataaataccaaccaaaaccttcataccaca |
20164782 |
T |
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