View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13712_low_1 (Length: 798)
Name: NF13712_low_1
Description: NF13712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13712_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 731; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 16 - 782
Target Start/End: Original strand, 2823400 - 2824166
Alignment:
| Q |
16 |
aagaacgaagatggaatccctatacaatcaacagaggaattcaccaatccagatgcagcctctagaactgatgaagaatctattactgtatccactgaaa |
115 |
Q |
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| T |
2823400 |
aagaatgaagatggaatccctatacaatcaacagaggaattcaccaatccagatgcagcctctagaactgatgaagaatctattactgtatccactgaaa |
2823499 |
T |
|
| Q |
116 |
ggaaggctgctacattgaaaacctcaaagaccgaagaagaacaggacgagacgagtaattcacaagataagatcctcaaaaaaccggacaaaatagttcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2823500 |
ggaaggctgctacattgaaaacctcaaagaccgaagaagaacaggacgagacgagtaattcacaagataagatcctcaaaaaaccggacaaaatagttcc |
2823599 |
T |
|
| Q |
216 |
ttgtcctcgctgtaatagcatggacacgaagttctgctactataataattacaatgtcaaccaaccccgtcatttctgcaagaactgccagagatattgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2823600 |
ttgtcctcgctgtaatagcatggacacgaagttctgctactataataattacaatgtcaaccaaccccgtcatttctgcaagaactgccagagatattgg |
2823699 |
T |
|
| Q |
316 |
actgccggtggaaccatgagaaacgtaccggtaggtgccggtcgtagaaaaaacaagagctcttcttctcactatcgccagataactgtctcagaagcga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2823700 |
actgccggtggaaccatgagaaacgtaccggtaggtgccggtcgtagaaaaaacaagagctcttcttctcactatcgccagataactgtctcagaagcga |
2823799 |
T |
|
| Q |
416 |
cactccagaattctcatacacacccttccttgaaatgcaatggtacaatccttacatttggatctaattcatctgtatgtgaatcaatggcatctgtttt |
515 |
Q |
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||||||||||||||| | |||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2823800 |
cactccagaattctcggatacacccttccgtgaaatgcaacggtacaatccttacatttggatctaattcacctgtatgtgaatcaatggcatctgtttt |
2823899 |
T |
|
| Q |
516 |
gaaacttgctgataaaacaatgcaaaattacacaagaaatggatatcataaacatgaagaactaagaatttgtgttcctcataccagtgaagaacaaggc |
615 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2823900 |
gaaacatgctgataaaacaatgcaaaattacacaagaaatggatatcataaacatgaagaactaagaatttgtgttcctcataccagtgaagaacaaggc |
2823999 |
T |
|
| Q |
616 |
gaggatcagtcaaataaatcgtcagttacctccacaaagtcgacggaaggtgcaaccaccaatgtatctcaagaacaagctatgtggaatggccatagct |
715 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2824000 |
gaggatcagtcaaataaatcgtcagttacctccacaaagtcgacggaaggtgcaaccaccaatgtatctcaagaacaagctatgtggaatgaccatagct |
2824099 |
T |
|
| Q |
716 |
tcccaccacaaggtggctactttcctcatggaactccttggcatttaccatggaatccagtgcaaat |
782 |
Q |
| |
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|
| T |
2824100 |
tcccaccacaaggtggctactttcctcatggaactccttggcatttaccatggaatccagtgcaaat |
2824166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 33752036 - 33752121
Alignment:
| Q |
268 |
aatgtcaaccaaccccgtcatttctgcaagaactgccagagatattggactgccggtggaaccatgagaaacgtaccggtaggtgc |
353 |
Q |
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| T |
33752036 |
aatgtcaatcaacctcgacatttctgcaagaactgccaaaggtattggactgctggtggaacaatgagaaatgttccgataggtgc |
33752121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 7e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 172 - 404
Target Start/End: Original strand, 3775531 - 3775763
Alignment:
| Q |
172 |
aattcacaagataagatcctcaaaaaaccggacaaaatagttccttgtcctcgctgtaatagcatggacacgaagttctgctactataataattacaatg |
271 |
Q |
| |
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||||| || ||||||| ||| ||||| || ||||||||| | || ||||| || ||| ||||||||||||| || ||||||||||| ||||| ||||||| |
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| T |
3775531 |
aattcgcatgataagaccctgaaaaagccagacaaaatactgccgtgtccccgttgttatagcatggacaccaaattctgctactacaataactacaatg |
3775630 |
T |
|
| Q |
272 |
tcaaccaaccccgtcatttctgcaagaactgccagagatattggactgccggtggaaccatgagaaacgtaccggtaggtgccggtcgtagaaaaaacaa |
371 |
Q |
| |
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| |||||||| || ||||| |||||||| ||||||||||| ||||||||||| ||| |||||||||| || || ||||| ||||||||||| || ||||| |
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| T |
3775631 |
ttaaccaacctcgccatttttgcaagaaatgccagagatactggactgccgggggagccatgagaaatgtgcctgtaggcgccggtcgtaggaagaacaa |
3775730 |
T |
|
| Q |
372 |
gagctcttcttctcactatcgccagataactgt |
404 |
Q |
| |
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|| ||| ||||||||| |||||| |||||||| |
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| T |
3775731 |
gaattctgcttctcactttcgccaaataactgt |
3775763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 232 - 337
Target Start/End: Original strand, 18188155 - 18188260
Alignment:
| Q |
232 |
agcatggacacgaagttctgctactataataattacaatgtcaaccaaccccgtcatttctgcaagaactgccagagatattggactgccggtggaacca |
331 |
Q |
| |
|
||||||||||| || || || ||||| ||||||||||| | |||||| |||||||| |||||||| ||||| ||||||||||||||| |||| ||||||| |
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| T |
18188155 |
agcatggacacaaaattttgttactacaataattacaacgccaaccagccccgtcacttctgcaaaaactgtcagagatattggacttccggaggaacca |
18188254 |
T |
|
| Q |
332 |
tgagaa |
337 |
Q |
| |
|
||||| |
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| T |
18188255 |
cgagaa |
18188260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 18193417 - 18193495
Alignment:
| Q |
253 |
tactataataattacaatgtcaaccaaccccgtcatttctgcaagaactgccagagatattggactgccggtggaacca |
331 |
Q |
| |
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||||| ||||||||||| | |||||| ||||| || |||||||| ||||| |||||||||||||||||||| ||||||| |
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| T |
18193417 |
tactacaataattacaacgccaaccagccccgacacttctgcaaaaactgtcagagatattggactgccggaggaacca |
18193495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 232 - 338
Target Start/End: Original strand, 18230801 - 18230907
Alignment:
| Q |
232 |
agcatggacacgaagttctgctactataataattacaatgtcaaccaaccccgtcatttctgcaagaactgccagagatattggactgccggtggaacca |
331 |
Q |
| |
|
||||||||||| || || || |||||||| || ||||| ||||| || ||||| || |||||||| ||||||||||| ||||||||| |||| ||| ||| |
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| T |
18230801 |
agcatggacacaaaattttgttactataacaactacaacgtcaaacagccccgacacttctgcaaaaactgccagaggtattggacttccggaggagcca |
18230900 |
T |
|
| Q |
332 |
tgagaaa |
338 |
Q |
| |
|
|||||| |
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|
| T |
18230901 |
cgagaaa |
18230907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 55456812 - 55456895
Alignment:
| Q |
18 |
gaacgaagatggaatccctatacaatcaacagaggaattcaccaatccagatgcagcctctagaactgatgaagaatctattac |
101 |
Q |
| |
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||||||||||||||||| | |||||||| ||| |||||||| ||| |||||||| ||||||||||||||||||||||| |||| |
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| T |
55456812 |
gaacgaagatggaatccttgcacaatcaagagaagaattcactaattcagatgcaacctctagaactgatgaagaatctgttac |
55456895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 237 - 353
Target Start/End: Complemental strand, 11624854 - 11624738
Alignment:
| Q |
237 |
ggacacgaagttctgctactataataattacaatgtcaaccaaccccgtcatttctgcaagaactgccagagatattggactgccggtggaaccatgaga |
336 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||| ||||| || || || ||||||||||| || || |||||||||||||| ||||||||||||||| |
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| T |
11624854 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttctgcaaggcgtgtcaaagatattggactgcaggtggaaccatgaga |
11624755 |
T |
|
| Q |
337 |
aacgtaccggtaggtgc |
353 |
Q |
| |
|
|| || ||||| ||||| |
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|
| T |
11624754 |
aatgttccggtgggtgc |
11624738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 338
Target Start/End: Original strand, 31771762 - 31771904
Alignment:
| Q |
196 |
aaaccggacaaaatagttccttgtcctcgctgtaatagcatggacacgaagttctgctactataataattacaatgtcaaccaaccccgtcatttctgca |
295 |
Q |
| |
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||||| ||||||||| |||| || || || || |||||||||||||| || || || |||| || ||||||||||||||||| || |||||||| || | |
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| T |
31771762 |
aaacctgacaaaataattccatgcccgcgatgcaatagcatggacaccaaattttgttacttcaacaattacaatgtcaaccagcctcgtcatttttgta |
31771861 |
T |
|
| Q |
296 |
agaactgccagagatattggactgccggtggaaccatgagaaa |
338 |
Q |
| |
|
|||| || || |||||||||||||| || ||||| |||||||| |
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|
| T |
31771862 |
agaaatgtcaaagatattggactgcaggaggaacaatgagaaa |
31771904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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