View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13712_low_2 (Length: 582)

Name: NF13712_low_2
Description: NF13712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13712_low_2
NF13712_low_2
[»] chr2 (10 HSPs)
chr2 (277-568)||(18929235-18929526)
chr2 (277-566)||(26650839-26651130)
chr2 (277-560)||(17402729-17403013)
chr2 (332-547)||(25520385-25520601)
chr2 (332-516)||(31404020-31404205)
chr2 (287-404)||(19878972-19879090)
chr2 (332-516)||(24543870-24544054)
chr2 (332-441)||(29891239-29891348)
chr2 (357-500)||(20478255-20478396)
chr2 (332-464)||(28760593-28760724)
[»] chr7 (13 HSPs)
chr7 (281-566)||(20145813-20146098)
chr7 (277-564)||(2546914-2547198)
chr7 (277-548)||(14987006-14987278)
chr7 (277-548)||(15416617-15416889)
chr7 (332-560)||(17600539-17600766)
chr7 (277-526)||(24832402-24832657)
chr7 (332-566)||(3743380-3743620)
chr7 (332-519)||(4173426-4173615)
chr7 (332-443)||(10649207-10649318)
chr7 (383-442)||(5531725-5531784)
chr7 (383-500)||(18046386-18046501)
chr7 (455-500)||(14961170-14961215)
chr7 (455-500)||(15390642-15390687)
[»] chr8 (16 HSPs)
chr8 (277-566)||(28371034-28371324)
chr8 (277-561)||(9218079-9218367)
chr8 (333-516)||(9286315-9286498)
chr8 (437-563)||(10660970-10661095)
chr8 (332-475)||(23540207-23540351)
chr8 (332-478)||(16600591-16600737)
chr8 (282-444)||(10661748-10661911)
chr8 (363-505)||(13110204-13110345)
chr8 (332-408)||(24577332-24577408)
chr8 (365-505)||(18672125-18672261)
chr8 (332-500)||(25095053-25095223)
chr8 (428-475)||(26136195-26136242)
chr8 (410-500)||(22713661-22713751)
chr8 (332-500)||(27123570-27123736)
chr8 (458-500)||(9006931-9006973)
chr8 (445-501)||(24680835-24680890)
[»] chr5 (16 HSPs)
chr5 (277-540)||(19217915-19218177)
chr5 (277-526)||(20064397-20064653)
chr5 (279-526)||(20060802-20061056)
chr5 (277-475)||(20713228-20713426)
chr5 (277-475)||(23210042-23210240)
chr5 (281-526)||(20058571-20058824)
chr5 (284-444)||(23379314-23379474)
chr5 (277-456)||(25951334-25951513)
chr5 (332-500)||(17167249-17167417)
chr5 (344-500)||(19923956-19924112)
chr5 (383-516)||(24878356-24878489)
chr5 (344-500)||(19926683-19926839)
chr5 (362-500)||(17987482-17987619)
chr5 (332-391)||(21165282-21165342)
chr5 (533-564)||(24878288-24878319)
chr5 (488-520)||(25951260-25951292)
[»] chr3 (16 HSPs)
chr3 (281-559)||(24698999-24699275)
chr3 (278-566)||(15686859-15687148)
chr3 (332-560)||(26010836-26011067)
chr3 (332-547)||(13428700-13428914)
chr3 (332-539)||(4769742-4769949)
chr3 (332-564)||(4765677-4765916)
chr3 (277-475)||(7148790-7148988)
chr3 (332-566)||(4832504-4832740)
chr3 (277-483)||(9033415-9033622)
chr3 (277-472)||(29614529-29614724)
chr3 (332-510)||(23378488-23378668)
chr3 (335-475)||(16242928-16243069)
chr3 (383-506)||(27304424-27304547)
chr3 (458-500)||(13409834-13409876)
chr3 (432-506)||(8737234-8737308)
chr3 (432-506)||(9089472-9089546)
[»] chr6 (12 HSPs)
chr6 (335-566)||(22397545-22397777)
chr6 (277-475)||(16177304-16177502)
chr6 (357-557)||(17524797-17524998)
chr6 (279-475)||(1177150-1177349)
chr6 (277-471)||(15830026-15830220)
chr6 (335-500)||(17947842-17948007)
chr6 (363-516)||(14762938-14763090)
chr6 (383-516)||(18713709-18713842)
chr6 (277-526)||(31126082-31126351)
chr6 (458-500)||(25945847-25945889)
chr6 (413-514)||(28712360-28712461)
chr6 (413-464)||(13002854-13002906)
[»] chr4 (7 HSPs)
chr4 (295-566)||(11361595-11361866)
chr4 (277-559)||(9409083-9409370)
chr4 (334-516)||(16675086-16675269)
chr4 (413-475)||(5358040-5358102)
chr4 (335-433)||(8140832-8140930)
chr4 (332-500)||(4697470-4697638)
chr4 (458-500)||(18558473-18558515)
[»] chr1 (12 HSPs)
chr1 (277-521)||(20146169-20146420)
chr1 (332-540)||(11013817-11014027)
chr1 (332-510)||(33103021-33103201)
chr1 (344-516)||(36571655-36571826)
chr1 (346-516)||(22607834-22608003)
chr1 (332-497)||(20150422-20150588)
chr1 (332-472)||(13202052-13202192)
chr1 (335-500)||(17615274-17615439)
chr1 (383-473)||(22620063-22620153)
chr1 (332-395)||(13232737-13232801)
chr1 (444-516)||(20866221-20866293)
chr1 (458-494)||(20886571-20886607)
[»] scaffold0555 (1 HSPs)
scaffold0555 (277-521)||(5599-5851)
[»] scaffold0264 (1 HSPs)
scaffold0264 (280-566)||(20793-21077)
[»] scaffold0016 (1 HSPs)
scaffold0016 (284-444)||(12991-13151)
[»] scaffold0337 (2 HSPs)
scaffold0337 (344-516)||(17221-17392)
scaffold0337 (357-516)||(4546-4703)
[»] scaffold0002 (1 HSPs)
scaffold0002 (332-496)||(374113-374275)
[»] scaffold0142 (1 HSPs)
scaffold0142 (332-485)||(20572-20725)
[»] scaffold1102 (1 HSPs)
scaffold1102 (332-468)||(859-996)
[»] scaffold0795 (1 HSPs)
scaffold0795 (278-324)||(5989-6035)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 277 - 568
Target Start/End: Complemental strand, 18929526 - 18929235
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 375  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| | ||| || |||||||  ||||||||| ||  |||| |||| |||||||||    
T  18929526 tctacatggaaggagtgttgatcgtgggattagtttctttccaagttattttctatgcataaatagtagttttccaaagggaaaatgggttgcaaatcac 18929427  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    ||||| | |||||||||||| |||||||||||| | ||||||| | ||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  18929426 ctatatagaattctaaaacactcgaagtaccggcgtgagagaagatagtcataaagaatgtatgtaaaagatttatcgaaccacctttatttttaatgca 18929327  T
Q  476 ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccacagg 568  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||||    
T  18929326 ttgtattttacctttcctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaacct-ttttatgtcgaaatacgccacagg 18929235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 277 - 566
Target Start/End: Complemental strand, 26651130 - 26650839
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccataga-aaaacgggtcgcaaatca 374  Q
    ||||||||||| ||||| | || |||||||| ||||||||| | |||| | | || ||||||||||||||||||||||||  ||||| ||||||||||||    
T  26651130 tctacatggaatgagtgctaatcgtgggattggtttctttcta-gttatttttctatgtataaataagagttttccatagggaaaacaggtcgcaaatca 26651032  T
Q  375 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 474  Q
    |||||||| |||||||||||| |||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |    
T  26651031 cctatacagaattctaaaacactcgaagcaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttataatcc 26650932  T
Q  475 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaa-ccttttttctgtcgaaagacgccaca 566  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  26650931 attgtattttacctttcctttaagtttctgcaatttaaacttcatgtctttactttgcttttaaaacccttttttctgtcgaaagaagccaca 26650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 277 - 560
Target Start/End: Complemental strand, 17403013 - 17402729
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccata-gaaaaacgggtcgcaaatca 374  Q
    ||||| |||||||||||||||| ||||||||    | |||||| |||| | |||| ||||||||||  |||| |||||| | ||||| ||||||||||||    
T  17403013 tctacgtggaaggagtgttgatcgtgggattatgctttttcca-gttattttcttatgtataaatagtagttctccataaggaaaacaggtcgcaaatca 17402915  T
Q  375 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 474  Q
    |||||| | |||||||||||| || |||||||||  |||||||||| ||| ||||||||||||||||||||||||||  ||| |||||||||||||||||    
T  17402914 cctatatagaattctaaaacactctaagtaccggcacgagagaaaaaagttataaagaatgtatgtaaaggatttgtataaccacctttatttttaatgc 17402815  T
Q  475 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagac 560  Q
    |||||||||||  ||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||||||    
T  17402814 attgtattttatatttcctttaagtttctgcaatttaaacttattgcctttactttgcttttaaaaccttttttttgttgaaagac 17402729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 332 - 547
Target Start/End: Original strand, 25520385 - 25520601
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||| ||||||||||||  ||||||||| |||||||||||||||| |||| ||||||| |||||||  ||| ||||||||||||||| ||| |    
T  25520385 tgtataaataatagttttccatagggaaaacgggttgcaaatcacctatacagaattataaaacactcgaagtgacggcgcgagagaaaagagtcataca 25520484  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 530  Q
     |||||||||||||| ||||||||||  ||||||||||||||||| |||| |||| |||| |||||| || ||||||||| ||||||||||||| |||||    
T  25520485 taatgtatgtaaaggttttgtcgaacctcctttatttttaatgcaatgtagtttatcttttctttaactttctgcaattttaacttaatgcctttacttt 25520584  T
Q  531 gcttttaaaaccttttt 547  Q
    |||||||||||||||||    
T  25520585 gcttttaaaaccttttt 25520601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 332 - 516
Target Start/End: Original strand, 31404020 - 31404205
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  |||||||||||   |||| |||||||||||||| |||  ||| |||||||||| |||||||||||| ||||||||||||||| ||| |    
T  31404020 tgtataaatagtagttttccatattgaaaatgggtcgcaaatcacttattgaaa-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 31404118  T
Q  431 gaatgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 516  Q
    |||||||||| ||| |||||||||||| ||||||  |||||||||| || | ||||||||| ||||||||| ||||| |||||||||    
T  31404119 gaatgtatgtaaaatgatttgtcgaaccaccttttattttaatgcaatgcaatttaccttttctttaagtttctgcattttaaactt 31404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 287 - 404
Target Start/End: Complemental strand, 19879090 - 19878972
Alignment:
Q  287 aggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaa 385  Q
    |||||||||||| |||||||| |||||||||||| ||| | ||| |||| |||||  |||||||||||| ||||||||||||||||||||||||||| ||    
T  19879090 aggagtgttgatcgtgggattagtttctttccaacttattttctatgtaaaaatagtagttttccataggaaaaacgggtcgcaaatcacctatacagaa 19878991  T
Q  386 ttctaaaacattcgaagta 404  Q
    |||||||||| | ||||||    
T  19878990 ttctaaaacactagaagta 19878972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 332 - 516
Target Start/End: Complemental strand, 24544054 - 24543870
Alignment:
Q  332 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  |||||||||||| ||||||||||| |||||||| |||| ||| ||  | |||| |||||||| ||| ||||||||||||| | ||| |    
T  24544054 tgtataaatagtagttttccataggaaaaacgggtcacaaatcacttatagaaatttg-acaacactcgaagtatcggcgcgagagaaaagatttataca 24543956  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 516  Q
     ||| |||||||||||||| | |||| |||||||||||||||||| || | ||||  ||||||  |||||  |||||||| |||||    
T  24543955 taatatatgtaaaggatttctggaaccacctttatttttaatgcaatgcaatttatttttcctacaagtttttgcaattttaactt 24543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 441
Target Start/End: Original strand, 29891239 - 29891348
Alignment:
Q  332 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  |||| |||||| ||||||||||||||| ||||| |||| ||| || ||||||| || ||||| ||| ||||||||||||| | ||| |    
T  29891239 tgtataaatagtagttgtccatatgaaaaacgggtcgcagatcacttatagaaa-ttataaaacactcaaagtatcggcgcgagagaaaagatttataca 29891337  T
Q  431 gaatgtatgta 441  Q
     ||||||||||    
T  29891338 aaatgtatgta 29891348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 357 - 500
Target Start/End: Original strand, 20478255 - 20478396
Alignment:
Q  357 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaa-ggatttgtcgaa 455  Q
    |||| |||||||||||||  |||||| ||||||| |||| || || |||||| ||||| |||| |||| ||| ||||||||||||||  ||||||| | |    
T  20478255 aaaatgggtcgcaaatca--tatacataattctacaacactcaaactaccggcgcgagggaaacgagttatacagaatgtatgtaaactgatttgtag-a 20478351  T
Q  456 ctacctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    | ||||||| |||||||| |||| ||||    |||||||||||||    
T  20478352 ccacctttaattttaatgaattgcatttatgttttcctttaagtt 20478396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 464
Target Start/End: Original strand, 28760593 - 28760724
Alignment:
Q  332 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggag-cgagagaaaagagtgataa 429  Q
    |||||||||||||||||| |||| |||||||  | |||||||||  ||||  ||||||||  ||  |||||||||||| | | |||||||||||| |||     
T  28760593 tgtataaataagagtttttcatatgaaaaacaagacgcaaatcatttata--aaattctagcac--tcgaagtaccggcgtctagagaaaagagtcatat 28760688  T
Q  430 agaatgtatgtaaa-ggatttgtcgaactaccttta 464  Q
    ||||||||||||||  |||||||||||| |||||||    
T  28760689 agaatgtatgtaaactgatttgtcgaaccaccttta 28760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 4e-89; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 281 - 566
Target Start/End: Complemental strand, 20146098 - 20145813
Alignment:
Q  281 catggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctat 379  Q
    ||||||||||||| |||| |||||||| |||||||||||||||| |  || ||||||||||  |||||| |||||  |||||||||||||||||||| ||    
T  20146098 catggaaggagtgctgatcgtgggattagtttctttccaagttatttcctatgtataaatagtagtttttcataggtaaaacgggtcgcaaatcacccat 20145999  T
Q  380 acaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgt 479  Q
     || |||||||||||| ||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20145998 gcataattctaaaacactcgaagtactggcgcgagagaagagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgt 20145899  T
Q  480 attttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 566  Q
    ||| ||||||||||| ||||| |||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  20145898 attctacctttccttgaagtttctgcaatttaaagttaatgcatttactttgcttttaaaacct-ttttctgtcgaaagacgccaca 20145813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 277 - 564
Target Start/End: Complemental strand, 2547198 - 2546914
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccataga-aaaacgggtcgcaaatca 374  Q
    |||||||||||||||||||||| |||||||| ||||||||| | |||| | | || ||||||| ||| ||||||||||||  ||||||||||||||||||    
T  2547198 tctacatggaaggagtgttgatcgtgggattagtttctttcta-gttatttttctatgtataagtaatagttttccatagggaaaacgggtcgcaaatca 2547100  T
Q  375 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 474  Q
    |||||| | |||||||||||| |||||||||||   |||||||||| ||| |||||||||| |||||||||||||| |  || |||||||||||     |    
T  2547099 cctatatagaattctaaaacactcgaagtaccgacccgagagaaaaaagtcataaagaatggatgtaaaggatttggcagaccacctttatttta----c 2547004  T
Q  475 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgcca 564  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  2547003 attgtattttacctttcctttaagtttctgcaatttaaacttaatgccttttctttgcttttaaaaccttttttccgtcgaaagacgcca 2546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 277 - 548
Target Start/End: Original strand, 14987006 - 14987278
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 375  Q
    ||||||||||||||||| |||| ||| |||  |||||||||||  ||| | ||||||||||||||||||||||||||||  |||| |||||||| |||||    
T  14987006 tctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaaaatgggtcgcatatcac 14987104  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||      
T  14987105 ctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaaccacctttatttttaatgag 14987204  T
Q  476 ttgta-ttttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 548  Q
     |||| ||||| |||| ||||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||    
T  14987205 atgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 14987278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 277 - 548
Target Start/End: Original strand, 15416617 - 15416889
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 375  Q
    ||||||||||||||||| |||| ||| |||  |||||||||||  ||| | ||||||||||||||||||||||||||||  |||| |||||||| |||||    
T  15416617 tctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaaaatgggtcgcatatcac 15416715  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||      
T  15416716 ctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaaccacctttatttttaatgag 15416815  T
Q  476 ttgta-ttttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 548  Q
     |||| ||||| |||| ||||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||    
T  15416816 atgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 15416889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 332 - 560
Target Start/End: Complemental strand, 17600766 - 17600539
Alignment:
Q  332 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  ||||||||||| | |||||| ||||||||||||||||||| |||||||||||| ||||||||||||  |||||| ||||||| |||||    
T  17600766 tgtataaatagtagttttccataaggaaaacgtgtcgcaaatcacctatacagaattctaaaacactcgaagtaccggcacgagaggaaagagtcataaa 17600667  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 530  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||  || ||||||||| |  | |||| |||||    
T  17600666 gaatgtatgtaaaggatttgtcgaacaacctttatttttaatgctttgtatgttatctttcctttaagtttatggaatttaaacct--ttcctttacttt 17600569  T
Q  531 gcttttaaaaccttttttctgtcgaaagac 560  Q
     ||||||||||||||||| |||||||||||    
T  17600568 tcttttaaaaccttttttttgtcgaaagac 17600539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 277 - 526
Target Start/End: Complemental strand, 24832657 - 24832402
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 375  Q
    ||||||||||||||||| ||||  || |||| ||||||||| |  ||| |  || ||||||||||| |||||| |||||  ||||||||||||||||| |    
T  24832657 tctacatggaaggagtggtgatcatgagattagtttctttctac-ttatttcctatgtataaataatagtttttcatagggaaaacgggtcgcaaatcgc 24832559  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    ||||||| |||| ||||||| |||||||| ||| || |||||||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||||    
T  24832558 ctatacagaatt-taaaacactcgaagtatcggcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccaccattatttttaatgca 24832460  T
Q  476 -------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 526  Q
           |||||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  24832459 cttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 24832402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 332 - 566
Target Start/End: Complemental strand, 3743620 - 3743380
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcgaagtaccggagcgagagaaaagagtgataa 429  Q
    ||||||||||  ||||||||| ||| |||||||||||||||||||||||||| |||||||||| || |||||||||||| ||   |||||||||| ||||    
T  3743620 tgtataaatagtagttttccaaagagaaaacgggtcgcaaatcacctatacataattctaaaaacactcgaagtaccggtgctgaagaaaagagtcataa 3743521  T
Q  430 agaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt-aaactt-aatgccttaac 527  Q
    | |||||||  |||||||||||||||| ||||||||||||||||| ||||| ||||  ||||||| ||| | ||||||||| |||||| |||||||| ||    
T  3743520 aaaatgtatacaaaggatttgtcgaaccacctttatttttaatgccttgtactttatttttccttcaagattctgcaatttcaaacttgaatgcctttac 3743421  T
Q  528 tttgctttt--aaaaccttttttctgtcgaaagacgccaca 566  Q
    ||| || ||  |||||| ||||| ||||||||||| |||||    
T  3743420 tttactgttaaaaaaccctttttttgtcgaaagacaccaca 3743380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 332 - 519
Target Start/End: Original strand, 4173426 - 4173615
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  || |||||||||  ||||||||||||||||| |||||| | |||||||||||| |||||||| ||  ||||||||||||||| |||||    
T  4173426 tgtataaatattagatttccatagggaaaacgggtcgcaaatcgcctatagagaattctaaaacactcgaagtatcgacgcgagagaaaagagtcataaa 4173525  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgca-ttgtattttacctttcctttaagttcctgcaatttaaacttaat 519  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||| ||| ||||    ||| ||||||||| ||||||||||||||||||    
T  4173526 gaatgtatgtaaaggatttgtcgaactagttttatctttaatgcacttgcatttgtatttttctttaagtttctgcaatttaaacttaat 4173615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 443
Target Start/End: Original strand, 10649207 - 10649318
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  |||| |||||||  |||| | |||||||||||| |||| ||| ||| |||||| ||||||||||||  |||||||||||||| |||||    
T  10649207 tgtataaatagtagttgtccatagggaaaatgagtcgcaaatcacttatagaaatttc-aaaacactcgaagtaccggcacgagagaaaagagttataaa 10649305  T
Q  431 gaatgtatgtaaa 443  Q
    |||||||||||||    
T  10649306 gaatgtatgtaaa 10649318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 442
Target Start/End: Original strand, 5531725 - 5531784
Alignment:
Q  383 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 442  Q
    ||||| || |||| |||||||||||| ||||||||||||||| ||| | |||||||||||    
T  5531725 aaattatacaacactcgaagtaccggtgcgagagaaaagagttatacaaaatgtatgtaa 5531784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 500
Target Start/End: Complemental strand, 18046501 - 18046386
Alignment:
Q  383 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtat 481  Q
    ||||||||||||| | |||||||||| |||||| |||||    ||| | ||||| ||||| | |||||||||||| ||||||| |||||||||| || |     
T  18046501 aaattctaaaacaattgaagtaccggcgcgagaaaaaaggc--atacataatgtgtgtaatatgatttgtcgaaccaccttta-ttttaatgcaatgcaa 18046405  T
Q  482 tttacctttcctttaagtt 500  Q
    ||||||||| |||||||||    
T  18046404 tttaccttttctttaagtt 18046386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 14961215 - 14961170
Alignment:
Q  455 actacctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    ||||||||||||||||||||| || ||||||||||| |||| ||||    
T  14961215 actacctttatttttaatgcaatgcattttaccttttctttgagtt 14961170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 15390687 - 15390642
Alignment:
Q  455 actacctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    ||||||||||||||||||||| || ||||||||||| |||| ||||    
T  15390687 actacctttatttttaatgcaatgcattttaccttttctttgagtt 15390642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 277 - 566
Target Start/End: Complemental strand, 28371324 - 28371034
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccataga-aaaacgggtcgcaaatca 374  Q
    ||||||||||||||||| |||| ||| |||| |||||||||||||||| | |||| ||||||||||  ||||||||||||  |||| |||||||||||||    
T  28371324 tctacatggaaggagtgctgatcgtgagattagtttctttccaagttatt-tcttatgtataaatagtagttttccatagggaaaatgggtcgcaaatca 28371226  T
Q  375 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 474  Q
    |||||| |||||||||||||| |||||||||| | | ||| ||||| ||| ||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  28371225 cctatataaaattctaaaacactcgaagtaccagtgtgagtgaaaaaagtcataaagaatgtatgtaaagtatttgtcgaacctcctttatttttaatgc 28371126  T
Q  475 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 566  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  28371125 attgtattttactgttcctttaagtttctgcaatttaaacttaatgcatttactttgcttttaaaaccatttttctgtcgaaagacgccaca 28371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 277 - 561
Target Start/End: Complemental strand, 9218367 - 9218079
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattc-gtttctttccaagttagtatctt-tgtataaataagagttttccataga-aaaacgggtcgcaaatc 373  Q
    ||||||||||||||||||||||  |||||||  | || ||| || |||||| | || ||||||||||   |||||||||||  |||||||||||||||||    
T  9218367 tctacatggaaggagtgttgatcatgggattgtgcttttttgca-gttagtttattatgtataaatagttgttttccatagggaaaacgggtcgcaaatc 9218269  T
Q  374 acctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatg 473  Q
    || |||||| |||||||||||| |||||||||||  ||||||||||||  | ||| |||||||||||||| |||||||||||| | ||||||||||||||    
T  9218268 acatatacagaattctaaaacactcgaagtaccgacgcgagagaaaag--tcatacagaatgtatgtaaatgatttgtcgaaccatctttatttttaatg 9218171  T
Q  474 cattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaacc----ttttttctgtcgaaagacg 561  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||  || ||||||||||||||| |    |||||||||||||||||||    
T  9218170 cattgtattttatctttcctttaagtttctgcaatttaaacttaatgtttttactttgcttttaaaaacctttttttttctgtcgaaagacg 9218079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 333 - 516
Target Start/End: Original strand, 9286315 - 9286498
Alignment:
Q  333 gtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaag 431  Q
    |||||||||  ||||||||||||  ||||||||||||||||||| |||| ||| ||||| |||| |||||||||||| ||||||||||| ||| ||| |     
T  9286315 gtataaatagtagttttccatagggaaaacgggtcgcaaatcacatatagaaa-ttctacaacactcgaagtaccggtgcgagagaaaatagttatacaa 9286413  T
Q  432 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 516  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | |||| ||||  |||||||| ||||| ||| |||||    
T  9286414 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcaatgcaatttatcttttttttaagtttctgcacttttaactt 9286498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 437 - 563
Target Start/End: Complemental strand, 10661095 - 10660970
Alignment:
Q  437 atgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgctttt 536  Q
    |||||||||||||||||||| ||||||||||| |||||||||  ||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  10661095 atgtaaaggatttgtcgaaccacctttattttgaatgcattgcgtttcacctttcctttaacttcctgcaatttaaacttaatgtctttactttgctttt 10660996  T
Q  537 aaaaccttttttctgtcgaaagacgcc 563  Q
    ||||||  ||||||||| |||||||||    
T  10660995 aaaacc-cttttctgtccaaagacgcc 10660970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 332 - 475
Target Start/End: Original strand, 23540207 - 23540351
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  ||||||||||||  ||||||||| |||||||||||||||| |||||||||| | || |||||||||  | |||||||||| | |||||    
T  23540207 tgtataaatagtagttttccatagggaaaacgggttgcaaatcacctatacagaattctaaaatactcaaagtaccggctcaagagaaaagaatcataaa 23540306  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||    
T  23540307 gaatgtatgtaaaagatttttcgaaccacctttatttttaatgca 23540351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 332 - 478
Target Start/End: Complemental strand, 16600737 - 16600591
Alignment:
Q  332 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  |||||||||||| |||||||||| ||||||||| |||| ||| ||||| |||| |||||||||||| ||||||||| ||||| ||| |    
T  16600737 tgtataaatagtagttttccataggaaaaacgggttgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgcgagagaatagagttataca 16600639  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattg 478  Q
     |||||| |||||||||||||||||| || ||||||||||||||||||    
T  16600638 taatgtacgtaaaggatttgtcgaaccacatttatttttaatgcattg 16600591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 282 - 444
Target Start/End: Complemental strand, 10661911 - 10661748
Alignment:
Q  282 atggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttcca-tagaaaaacgggtcgcaaatcacctata 380  Q
    ||||||||||||||||| |||||||| |||||||||| ||||  | ||| ||||||||||||||||||||| | | ||||| ||||||||||||||||||    
T  10661911 atggaaggagtgttgatcgtgggattagtttctttcc-agttgttttctatgtataaataagagttttccattgggaaaacaggtcgcaaatcacctata 10661813  T
Q  381 caaaattct-aaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaag 444  Q
    || |||||| |||||  || | ||||||| |||| | |||||||| |||||||||||||||||||    
T  10661812 cagaattctaaaaactctcaatgtaccggtgcgataaaaaagagtcataaagaatgtatgtaaag 10661748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 363 - 505
Target Start/End: Complemental strand, 13110345 - 13110204
Alignment:
Q  363 ggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctt 462  Q
    ||||||||||||| |||| ||| ||||| |||| |||||||||||| | ||||||||||||| ||| | ||| |||||| | ||||||| |||| |||||    
T  13110345 ggtcgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgagagagaaaagagttatacaaaatatatgtatatgatttgttgaaccacctt 13110247  T
Q  463 tatttttaatgcattgtattttacctttcctttaagttcctgc 505  Q
    ||||||||||||| || | |||| |||| ||||||||| ||||    
T  13110246 tatttttaatgcaatgcaatttatcttttctttaagtttctgc 13110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 332 - 408
Target Start/End: Original strand, 24577332 - 24577408
Alignment:
Q  332 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccgg 408  Q
    ||||||||||  |||||| ||||| ||||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  24577332 tgtataaatagtagtttttcataggaaaacgggtggcaaatcacctatacagaattctaaaacaatcgaagtaccgg 24577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 505
Target Start/End: Original strand, 18672125 - 18672261
Alignment:
Q  365 tcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactaccttta 464  Q
    ||||||||||| |||| ||| ||||| |||| ||||||||| || | ||||||||||||| ||| | |||||||||||| ||||||| ||   |||||||    
T  18672125 tcgcaaatcacttatagaaa-ttctacaacactcgaagtactggcgagagagaaaagagttatacaaaatgtatgtaaatgatttgttga---accttta 18672220  T
Q  465 tttttaatgcattgtattttacctttcctttaagttcctgc 505  Q
    ||||||||||| |||| |||| |||| ||| ||||| ||||    
T  18672221 tttttaatgcaatgtaatttatcttttcttgaagtttctgc 18672261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 332 - 500
Target Start/End: Complemental strand, 25095223 - 25095053
Alignment:
Q  332 tgtataaataagagttttccatag--aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataa 429  Q
    ||||||||||  |||||||||||   |||||| |  |||||||||| |||| ||| ||||||||||  ||||||||||| |||||| |||||||| |||     
T  25095223 tgtataaatagtagttttccatattaaaaaacagaccgcaaatcacttatagaaa-ttctaaaacacccgaagtaccggcgcgagataaaagagttatac 25095125  T
Q  430 agaatgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    |  |||||||| |||  ||||||||||| ||||||||| | |||||| || | |||| |||| |||||||||    
T  25095124 atgatgtatgtaaaattatttgtcgaaccacctttattataaatgcaatgcaatttatcttttctttaagtt 25095053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 428 - 475
Target Start/End: Original strand, 26136195 - 26136242
Alignment:
Q  428 aaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||    
T  26136195 aaagaatgtatgtaaaggatttgtcggaccacctttatttttaatgca 26136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 410 - 500
Target Start/End: Original strand, 22713661 - 22713751
Alignment:
Q  410 gcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    |||| |||||||| | ||| ||||| ||||||||| ||||||| ||| |||||||||||||||||| ||||  ||| |||| |||||||||    
T  22713661 gcgatagaaaagatttatatagaatatatgtaaagaatttgtcaaaccacctttatttttaatgcaatgtaaattatcttttctttaagtt 22713751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 500
Target Start/End: Original strand, 27123570 - 27123736
Alignment:
Q  332 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  |||||||||||| ||||| | |||||||||||  |||| ||| ||||| |||| ||  |||||||  ||||||||||||||| ||| |    
T  27123570 tgtataaatagtagttttccataggaaaaatgagtcgcaaatcaattatagaaa-ttctacaacactc--agtaccgatgcgagagaaaagagttataca 27123666  T
Q  431 gaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
     |||||||||||   ||||| |||||| ||||||| |||||||||| || | |||| | ||||||||||||    
T  27123667 taatgtatgtaatctgatttatcgaaccaccttta-ttttaatgcaatgcaatttatcattcctttaagtt 27123736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 500
Target Start/End: Complemental strand, 9006973 - 9006931
Alignment:
Q  458 acctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    |||||||||||||||||| |  |||||||||||||||||||||    
T  9006973 acctttatttttaatgcaatacattttacctttcctttaagtt 9006931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 501
Target Start/End: Original strand, 24680835 - 24680890
Alignment:
Q  445 gatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttc 501  Q
    |||||||||||| || |||| |||||||||| |||| ||||||||| ||||||||||    
T  24680835 gatttgtcgaaccacattta-ttttaatgcaatgtaatttaccttttctttaagttc 24680890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 8e-81; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 277 - 540
Target Start/End: Original strand, 19217915 - 19218177
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 375  Q
    |||||||| |||||||| || | |||||||| ||||||||||| |||| | | | |||||||||||  |||||||||||  |||||||||||||||||||    
T  19217915 tctacatgaaaggagtgctggtcgtgggattagtttctttcca-gttattttttatgtataaataactgttttccatagggaaaacgggtcgcaaatcac 19218013  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    ||||||||| |||||||||| || ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19218014 ctatacaaa-ttctaaaacactcaaagtaccggcgcgagagaaaagagccataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 19218112  T
Q  476 ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaa 540  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  19218113 ttgtattttacatttcctttaagtttctacaatttaaacttaatgcctttactttgcttttaaaa 19218177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 277 - 526
Target Start/End: Original strand, 20064397 - 20064653
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 375  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||  ||| |  || ||||||||||| ||||||||||||  ||||||||||||||||| |    
T  20064397 tctacatggaaggtgtgctgattgtgggattagtttctttccac-ttatttactatgtataaataatagttttccatagggaaaacgggtcgcaaatcgc 20064495  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    ||||||| |||||||||||| |  ||||||||| || |||||||||||| ||||| |||||||||||| ||||||| |||| ||||||||||||||||||    
T  20064496 ctatacagaattctaaaacactgaaagtaccggtgcaagagaaaagagttataaaaaatgtatgtaaatgatttgttgaaccacctttatttttaatgca 20064595  T
Q  476 -------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 526  Q
           || ||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  20064596 cttgcatttatattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20064653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 279 - 526
Target Start/End: Complemental strand, 20061056 - 20060802
Alignment:
Q  279 tacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaa-acgggtcgcaaatcacct 377  Q
    |||||| || ||||| |||| |||||||| ||||||||| || ||| |  || ||||||||| | ||||||||||||   | |||||| ||||||| |||    
T  20061056 tacatgtaatgagtgatgatcgtgggattagtttctttc-aacttacttcctatgtataaatgatagttttccatagggtagacgggttgcaaatcgcct 20060958  T
Q  378 atacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca-- 475  Q
    ||||| |||||||||||||| ||| |||||| || |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||      
T  20060957 atacagaattctaaaacatttgaactaccggcgcaagagaaaagagtcataaacaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcact 20060858  T
Q  476 -----ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 526  Q
         |||||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  20060857 tgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 277 - 475
Target Start/End: Complemental strand, 20713426 - 20713228
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 375  Q
    ||||||||||||||||| |||| |||||||| ||||||||| || ||| |  || ||||||||||| ||||||||||||  ||||||||||||||||| |    
T  20713426 tctacatggaaggagtgctgatcgtgggattagtttctttc-aacttatttcctatgtataaataatagttttccatagggaaaacgggtcgcaaatcgc 20713328  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
     |||||| |||||||||||| ||||| |||||  || |||||||||||| |||||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  20713327 atatacagaattctaaaacactcgaaataccgatgcaagagaaaagagtcataaagaatgtatgtaacagatttgttgaacaacctttatttttaatgca 20713228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 277 - 475
Target Start/End: Original strand, 23210042 - 23210240
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 375  Q
    |||| ||||||||||||||||| |||||||| |||||||||||  ||| |  || ||||||||||| ||||| ||||||  ||||| |||||||||||      
T  23210042 tctaaatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaataatagtttcccatagggaaaacaggtcgcaaatcgt 23210140  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
     |||||| |||||||||||| |||||||||||| || ||||||||||||  |||||||||||||||||||||||||||||| || |||||||||||||||    
T  23210141 atatacataattctaaaacactcgaagtaccggcgcaagagaaaagagtcttaaagaatgtatgtaaaggatttgtcgaaccacttttatttttaatgca 23210240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 281 - 526
Target Start/End: Original strand, 20058571 - 20058824
Alignment:
Q  281 catggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctat 379  Q
    ||||||||||||| |||| |||||||| |||| ||| | | ||| |  || ||||||||| | ||||||||||| |  | || ||| ||||||| |||||    
T  20058571 catggaaggagtgctgatcgtgggattagttttttttccacttacttcctatgtataaatgatagttttccataaggtagacaggttgcaaatcgcctat 20058670  T
Q  380 acaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca---- 475  Q
     |||||||||||||||||| ||||||  | || |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||        
T  20058671 gcaaaattctaaaacattcaaagtactagcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccacctttatttttaatgcaattg 20058770  T
Q  476 ---ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 526  Q
       |||||||||   |||  |||||||| |||||||||||||||||||| ||||    
T  20058771 catttgtattttttattttatttaagtttctgcaatttaaacttaatgcattaa 20058824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 284 - 444
Target Start/End: Original strand, 23379314 - 23379474
Alignment:
Q  284 ggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctataca 382  Q
    ||||||||||||||| |||||||| |||||||| |   ||| | ||| ||||||||||  ||||||||||||  ||||||||||||||||||||||| ||    
T  23379314 ggaaggagtgttgatcgtgggattagtttctttactc-ttattttctatgtataaatagtagttttccatagggaaaacgggtcgcaaatcacctatgca 23379412  T
Q  383 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaag 444  Q
     |||||||||||| |||||||||  | ||||||||||||||| |||||||||||||||||||    
T  23379413 gaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaaag 23379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 277 - 456
Target Start/End: Complemental strand, 25951513 - 25951334
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 375  Q
    |||||||||||||||||||||| ||| |||| |||||||| | | ||| |  |  ||||||||||| ||||||||||||  ||||| ||||| ||||| |    
T  25951513 tctacatggaaggagtgttgatcgtgagattagtttcttttccacttatttccgatgtataaataatagttttccataggtaaaacaggtcgtaaatcgc 25951414  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaac 456  Q
     |||||| |||||||||||| || |||||||| |  ||||||||||||| |||||||||||||||||| ||||||||||||    
T  25951413 ttatacataattctaaaacactcaaagtaccg-acagagagaaaagagtcataaagaatgtatgtaaaagatttgtcgaac 25951334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 332 - 500
Target Start/End: Original strand, 17167249 - 17167417
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  |||||||||| |  |||||||||| |||||||| |||| ||| ||||| ||||   |||||||| | ||||||||||||||| ||| |    
T  17167249 tgtataaatagtagttttccatggggaaaacgggtcccaaatcacttatagaaa-ttctacaacaccagaagtaccagcgcgagagaaaagagtaataca 17167347  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
     ||||||||||||||||||||||||| |||||||||||||||| | || | |||| |||| |||||||||    
T  17167348 aaatgtatgtaaaggatttgtcgaaccacctttatttttaatgtaatgcaatttatcttttctttaagtt 17167417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 344 - 500
Target Start/End: Original strand, 19923956 - 19924112
Alignment:
Q  344 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 442  Q
    ||||||||||||  |||| |||||||||| ||| |||| ||| |||||  ||| | ||| ||| || ||||||||||||||| ||| ||||||||| |||    
T  19923956 agttttccatagggaaaatgggtcgcaaaccacttatagaaa-ttctaccacacttgaattactggcgcgagagaaaagagttatacagaatgtatataa 19924054  T
Q  443 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    | |||||||||||| |||||||||||||||||| |||| |||| |||| |||||||||    
T  19924055 aagatttgtcgaaccacctttatttttaatgcaatgtaatttatcttttctttaagtt 19924112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 383 - 516
Target Start/End: Complemental strand, 24878489 - 24878356
Alignment:
Q  383 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtatt 482  Q
    |||||||| |||| ||||| |||||  ||||||||||||||| |||   ||| ||||||||||||||||| ||| |||||||||||||||||| || | |    
T  24878489 aaattctacaacactcgaattaccgacgcgagagaaaagagttatacgtaatttatgtaaaggatttgtcaaaccacctttatttttaatgcaatgcaat 24878390  T
Q  483 ttacctttcctttaagttcctgcaatttaaactt 516  Q
    ||| |||| ||||||||| ||||  |||||||||    
T  24878389 ttatcttttctttaagtttctgcgttttaaactt 24878356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 344 - 500
Target Start/End: Original strand, 19926683 - 19926839
Alignment:
Q  344 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 442  Q
    ||||||||||||  |||| |||||||||| ||| |||| ||| |||||  ||| | ||| ||| || ||||||||||| ||| ||| ||||||||  |||    
T  19926683 agttttccatagggaaaatgggtcgcaaaccacttatagaaa-ttctaccacacttgaattactggcgcgagagaaaatagttatacagaatgtaaataa 19926781  T
Q  443 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    | |||||||||||| |||||||||||||||||| || | |||| |||| |||||||||    
T  19926782 aagatttgtcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtt 19926839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 362 - 500
Target Start/End: Complemental strand, 17987619 - 17987482
Alignment:
Q  362 gggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggag-cgagagaaaagagtgataaagaatgtatgtaaag-gatttgtcgaactac 459  Q
    |||||||||||||  |||||| |||||||||||| || || |||||  | | || |||| |||| ||| |||||||||||| |  ||||||| || | ||    
T  17987619 gggtcgcaaatca--tatacagaattctaaaacactcaaactaccgacgtctagggaaacgagttatacagaatgtatgtagactgatttgtagacc-ac 17987523  T
Q  460 ctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    |||||||||||||||| || |||||||||||||||| ||||    
T  17987522 ctttatttttaatgcaatgcattttacctttcctttgagtt 17987482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 21165342 - 21165282
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaa 391  Q
    ||||||||||| ||||||||||||  ||||||||||||||||| |||||| | ||||||||    
T  21165342 tgtataaataatagttttccatagggaaaacgggtcgcaaatcgcctatatagaattctaa 21165282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 533 - 564
Target Start/End: Complemental strand, 24878319 - 24878288
Alignment:
Q  533 ttttaaaaccttttttctgtcgaaagacgcca 564  Q
    ||||||||||||||||||||||||||||||||    
T  24878319 ttttaaaaccttttttctgtcgaaagacgcca 24878288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 520
Target Start/End: Complemental strand, 25951292 - 25951260
Alignment:
Q  488 tttcctttaagttcctgcaatttaaacttaatg 520  Q
    ||||||||||||| |||||||||||||||||||    
T  25951292 tttcctttaagtttctgcaatttaaacttaatg 25951260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 281 - 559
Target Start/End: Original strand, 24698999 - 24699275
Alignment:
Q  281 catggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctat 379  Q
    ||||||||||||||||   ||| |||| |||||||| |  |||| | ||| ||||||||||| ||||||||||||  ||||||||||||||||| |||||    
T  24698999 catggaaggagtgttggacgtgtgattagtttcttttcc-gttattttctatgtataaataatagttttccatagggaaaacgggtcgcaaatcccctat 24699097  T
Q  380 acaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgt 479  Q
    ||| |||||||||||| |||||||||||| ||||||||||||| | |  |||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  24699098 acagaattctaaaacactcgaagtaccggcgcgagagaaaagaatca--aagaatgtatttaaaggatttgtcgaaccacctttatttttaatgcattgt 24699195  T
Q  480 attttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaaga 559  Q
    |||||||||||||||||||||  |||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||    
T  24699196 attttacctttcctttaagtttatgcaatttaaacttaatgcctttactttgcttatgaaaccctttttctgtcgaaaga 24699275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 278 - 566
Target Start/End: Complemental strand, 15687148 - 15686859
Alignment:
Q  278 ctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaa-aaacgggtcgcaaatcacc 376  Q
    |||||| ||||||||| |||| |||||||| ||||||||||| |||| | ||| ||||||||||||||||||||||||   ||||| |||||||||||||    
T  15687148 ctacatagaaggagtgatgatcgtgggattagtttctttcca-gttattttctatgtataaataagagttttccatagtggaaacgagtcgcaaatcacc 15687050  T
Q  377 tatacaaaattctaaaac-attcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    |||||  ||||||||||  | |||||||||||  |||||||||||||||  ||||||||||||| || |||||| | | || ||||||||||||||||||    
T  15687049 tatactgaattctaaaaatactcgaagtaccgacgcgagagaaaagagtcttaaagaatgtatgaaatggatttttaggaccacctttatttttaatgca 15686950  T
Q  476 ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 566  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||    
T  15686949 ttgtattttacctttgctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaaccctttttctatcgaaacacgccaca 15686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 332 - 560
Target Start/End: Complemental strand, 26011067 - 26010836
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  ||||||||||||  ||||| |||||||||||||||||||  |||||||||||| |||||||||||| ||||||||| ||||| |||||    
T  26011067 tgtataaatagtagttttccatagggaaaacaggtcgcaaatcacctataccgaattctaaaacactcgaagtaccggcgcgagagaatagagtcataaa 26010968  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa---tttaaacttaatgccttaac 527  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||    |||||||||||||||| ||    
T  26010967 gaatgtatgtaaatgatttgtcgaaccacctttatttttaaagcattgtattttatctttcctttaagtttctgcaagttattaaacttaatgcctttac 26010868  T
Q  528 tttgcttttaaaaccttttttctgtcgaaagac 560  Q
    ||||||||||||| |  ||||||||||||||||    
T  26010867 tttgcttttaaaaac-cttttctgtcgaaagac 26010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 332 - 547
Target Start/End: Original strand, 13428700 - 13428914
Alignment:
Q  332 tgtataaataagagttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  ||||||||||||   ||||  ||||||||||||||||| ||  |||||||||| |||||||||||  | ||||||||||||| |||||    
T  13428700 tgtataaatagtagttttccataggggaaacatgtcgcaaatcacctatataa--ttctaaaacactcgaagtaccgacgtgagagaaaagagtaataaa 13428797  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 530  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||||||||||| ||||||||||| || |||||||||||||||||||| || |||||    
T  13428798 gaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctttcctttaaatttctgcaatttaaacttaatgcatttacttt 13428897  T
Q  531 gcttttaaaaccttttt 547  Q
    |||||||||||| ||||    
T  13428898 gcttttaaaaccctttt 13428914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 332 - 539
Target Start/End: Complemental strand, 4769949 - 4769742
Alignment:
Q  332 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaag 431  Q
    ||||||||||  ||||||||||||  ||| | ||| ||||||| ||||||| |||||||||||| ||||| |||| | || |||||||||||| ||||||    
T  4769949 tgtataaatagtagttttccatagggaaaagcgtcccaaatcatctatacataattctaaaacactcgaaataccagcgcaagagaaaagagtcataaag 4769850  T
Q  432 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttg 531  Q
    ||||||||||| | |||| |||||| |||||||||| |||||||||||||||   ||||||||||||||  || ||||||||||||||||||| ||||||    
T  4769849 aatgtatgtaacgaatttttcgaaccacctttatttctaatgcattgtatttattctttcctttaagtttatgaaatttaaacttaatgcctttactttg 4769750  T
Q  532 cttttaaa 539  Q
    ||||||||    
T  4769749 cttttaaa 4769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 332 - 564
Target Start/End: Original strand, 4765677 - 4765916
Alignment:
Q  332 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  |||||||||||| ||||| ||||||||||||||||||| |  ||||||||||| | || ||||  | ||||||||||||||| |||||    
T  4765677 tgtataaatagtagttttccataggaaaaatgggtcgcaaatcacctatatagtattctaaaacacttgatgtactagcgcgagagaaaagagtcataaa 4765776  T
Q  431 gaat----gtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgcctta 525  Q
    ||||    ||||||||| |||||||||||| ||||||| ||||||||||||||| ||||  |||||||||||||  ||||| |||||||||||||||||     
T  4765777 gaattaatgtatgtaaatgatttgtcgaaccacctttacttttaatgcattgtactttatttttcctttaagtttatgcaattttaaacttaatgccttt 4765876  T
Q  526 actttgctttt-aaaaccttttttctgtcgaaagacgcca 564  Q
    ||||||||||| |||||| ||||  |||||||||||||||    
T  4765877 actttgcttttaaaaacccttttcatgtcgaaagacgcca 4765916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 277 - 475
Target Start/End: Complemental strand, 7148988 - 7148790
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaaac-gggtcgcaaatcac 375  Q
    |||||||||||||||||||||| |||||||| |||||||||||| ||| |  || ||||||||||  |||||||||||| ||||| ||||| |||||  |    
T  7148988 tctacatggaaggagtgttgatcgtgggattagtttctttccaa-ttatttcctatgtataaatagtagttttccataggaaaaccgggtcacaaattgc 7148890  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    ||||||| |||||||||| | | |||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| || |||| ||||||||||    
T  7148889 ctatacagaattctaaaatagttgaagtaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacttttacttttaatgca 7148790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 332 - 566
Target Start/End: Original strand, 4832504 - 4832740
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  ||||||||||||  |||| || |||||||||||||||||| |||||||||||| |||||| |  || | ||||||||||||| | |||    
T  4832504 tgtataaatagtagttttccatagggaaaatggatcgcaaatcacctatacagaattctaaaacactcgaagcattggtgtgagagaaaagagtcacaaa 4832603  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 530  Q
    |||| ||| |||||||| ||  | || |||||||| |||||||||||||||||||  |||||||| ||||  |||||||||||||||||| ||| || ||    
T  4832604 gaatatatttaaaggatctgctggaccacctttatatttaatgcattgtattttaattttcctttgagtttatgcaatttaaacttaatgtctttacctt 4832703  T
Q  531 gcttttaaaa-ccttttttctgtcgaaagacgccaca 566  Q
    ||||| |||| |||||||||| |||||||||| ||||    
T  4832704 gctttaaaaacccttttttctttcgaaagacgtcaca 4832740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 277 - 483
Target Start/End: Original strand, 9033415 - 9033622
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccatagaaaaacgggtcgcaaatcac 375  Q
    |||||||||| ||||||||||| ||| |||| |||||||||||  ||| | |||| ||||||||||| |||||||||||| ||||||||||||| ||| |    
T  9033415 tctacatggagggagtgttgatcgtgtgattagtttctttccac-ttatt-tcttatgtataaataatagttttccataggaaaacgggtcgcatatcgc 9033512  T
Q  376 ctatacaaaattct-aaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 474  Q
    ||||||| |||| | |||||| |||||||| ||| || ||||||||  || | ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  9033513 ctatacagaattttcaaaacactcgaagtatcggcgcaagagaaaatggtcacaaagaatgtatgtaaaggatttgtcaaaccacctttatttttaatgc 9033612  T
Q  475 a-ttgtattt 483  Q
    | ||||||||    
T  9033613 acttgtattt 9033622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 277 - 472
Target Start/End: Original strand, 29614529 - 29614724
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 375  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||  ||| |  || |||||||| || ||||||||||||  |||| |||||||||||| |    
T  29614529 tctacatggaaggagtgctgattgtgggattagtttcttttcat-ttatttcctatgtataaa-aatagttttccatagggaaaatgggtcgcaaatcgc 29614626  T
Q  376 ctatacaaaattctaa-aacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaat 472  Q
    ||||| | |||||||| |||| |||||||||||   | |||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  29614627 ctatatataattctaagaacactcgaagtaccgacacaagagaaaagagtcataaataatgtatgtaaaggatttgtcgaaccacctttatttttaat 29614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 332 - 510
Target Start/End: Complemental strand, 23378668 - 23378488
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  |||||| |||||  |||| | ||| |||||||| ||||||||||||||||| | |||||||| ||| ||||||||||||||| ||| |    
T  23378668 tgtataaatagtagttttacatagggaaaatgtgtcacaaatcacttatacaaaattctaaaatactcgaagtatcggcgcgagagaaaagagtcataca 23378569  T
Q  431 gaatgtatgtaaaggatttg-tcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt 510  Q
     ||||||||||||||||||| | |||| |||||||||||||||||| || | |||| |||||||||||||| || ||||||    
T  23378568 taatgtatgtaaaggatttgtttgaaccacctttatttttaatgcaatgcaatttatctttcctttaagtttctacaattt 23378488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 335 - 475
Target Start/End: Original strand, 16242928 - 16243069
Alignment:
Q  335 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaa 433  Q
    |||||||  ||||||||||||  |||||| |||| ||||  ||| ||||  ||||||||||| ||||||||||   ||||||||||||||| ||||||||    
T  16242928 ataaatagtagttttccatagggaaaacgagtcgtaaatttcctctacaggattctaaaacactcgaagtaccaacgcgagagaaaagagtcataaagaa 16243027  T
Q  434 tgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    ||||||||||| ||||||||||| || |||||||||||||||    
T  16243028 tgtatgtaaagcatttgtcgaaccacttttatttttaatgca 16243069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 27304424 - 27304547
Alignment:
Q  383 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtatt 482  Q
    |||||||| |||| || ||||| |||  |||||||||||| | ||| | |||||||||| || ||||||| ||| || ||||||||||||||| || | |    
T  27304424 aaattctacaacactcaaagtatcggctcgagagaaaagaattatacaaaatgtatgtatagaatttgtcaaaccacttttatttttaatgcaatgcaat 27304523  T
Q  483 ttacctttcctttaagttcctgca 506  Q
    |||  ||| ||||||||| |||||    
T  27304524 ttatattttctttaagtttctgca 27304547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 500
Target Start/End: Complemental strand, 13409876 - 13409834
Alignment:
Q  458 acctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  13409876 acctttatttttaatgcaatgcattttacctttcctttaagtt 13409834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 506
Target Start/End: Original strand, 8737234 - 8737308
Alignment:
Q  432 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgca 506  Q
    |||| ||||||||||||||| |||| ||||||||||| |||||| || | |||| |||| |||||| || |||||    
T  8737234 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 8737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 506
Target Start/End: Original strand, 9089472 - 9089546
Alignment:
Q  432 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgca 506  Q
    |||| ||||||||||||||| |||| ||||||||||| |||||| || | |||| |||| |||||| || |||||    
T  9089472 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 9089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 8e-78; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 335 - 566
Target Start/End: Original strand, 22397545 - 22397777
Alignment:
Q  335 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcgaagtaccggagcgagagaaaagagtgataaaga 432  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||| || |||||||||||| ||||||||||| ||| |||||||    
T  22397545 ataaataagagttttccgtagggaaaacgggtcgcaaatcacctatacagaattctaaaaacactcgaagtaccggcgcgagagaaaatagtcataaaga 22397644  T
Q  433 atgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcc-tttaagttcctgcaatttaaacttaatgccttaactttg 531  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    |||||     
T  22397645 atgtatgtaaaggatttgtcgaacaacctttatttttaatgcattgtattttacctttccttttaagtttctgcaatttaaacttaatgc--agactttt 22397742  T
Q  532 cttttaaaaccttttttctgtcgaaagacgccaca 566  Q
    ||||||||||||||||| |||||||||||||||||    
T  22397743 cttttaaaaccttttttttgtcgaaagacgccaca 22397777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 277 - 475
Target Start/End: Complemental strand, 16177502 - 16177304
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 375  Q
    ||||||||||||||||| ||||||||||||| |||||||||||  ||| | ||| ||||||||||  ||||||||||| | |||||||||||||||| ||    
T  16177502 tctacatggaaggagtgctgattgtgggattagtttctttccac-ttattttctatgtataaatattagttttccatatggaaaacgggtcgcaaataac 16177404  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    |||||||||||||||||||| ||||||||||      |||||||||||| |||||||||||||||||||||||| |||||| || |||||||||||||||    
T  16177403 ctatacaaaattctaaaacactcgaagtaccaacataagagaaaagagtcataaagaatgtatgtaaaggatttttcgaaccacatttatttttaatgca 16177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 357 - 557
Target Start/End: Complemental strand, 17524998 - 17524797
Alignment:
Q  357 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaac 456  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||||| | || | ||||||||||||| ||||||||||||| ||||||| |||||| ||    
T  17524998 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtgctggcgtgagagaaaagagtcataaagaatgtatttaaagga-ttgtcggac 17524900  T
Q  457 tacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctgtcg 554  Q
     |||||||||||||||||||| || ||||  ||| ||||||||| || ||| |||||| ||||| |||| |||||| |||| |||||||||||| | |||    
T  17524899 aacctttatttttaatgcattataatttattttttctttaagtttctacaattttaaaattaattcctttactttgtttttaaaaaccttttttttatcg 17524800  T
Q  555 aaa 557  Q
    |||    
T  17524799 aaa 17524797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 279 - 475
Target Start/End: Original strand, 1177150 - 1177349
Alignment:
Q  279 tacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaaacgggtcgcaaatcaccta 378  Q
    |||||||| |||||||||||  || |||| |||||||| ||  ||| |  || ||||||||||  |||||| ||||| ||||| || ||||||||| |||    
T  1177150 tacatggagggagtgttgatcatgagattagtttcttttcat-ttatttcctatgtataaatagtagttttgcataggaaaacaggacgcaaatcatcta 1177248  T
Q  379 tacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaaga----atgtatgtaaaggatttgtcgaactacctttatttttaatgc 474  Q
    |||| |||||||||||| |||||||||  | ||||||||||||||| |||||||    |||||||||||||||||||||||| |||||||||||||||||    
T  1177249 tacagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatacatgtatgtaaaggatttgtcgaaccacctttatttttaatgc 1177348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 277 - 471
Target Start/End: Complemental strand, 15830220 - 15830026
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 375  Q
    ||||||||||| ||||| | ||| ||||||| |||||||||||  ||| | ||| ||||||||||| |||||| |||| | ||||||||||||||||| |    
T  15830220 tctacatggaaagagtgctaattatgggattagtttctttccac-ttattttctatgtataaataatagttttgcataaggaaaacgggtcgcaaatcgc 15830122  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaa 471  Q
    ||||||| |||||||||||| || ||||| | | | ||||||||||||| ||||| |||||||||||| |||||||||||  || |||||||||||    
T  15830121 ctatacagaattctaaaacactcaaagtatcagtgtgagagaaaagagtcataaataatgtatgtaaaagatttgtcgaatcacttttatttttaa 15830026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 335 - 500
Target Start/End: Original strand, 17947842 - 17948007
Alignment:
Q  335 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaa 433  Q
    |||||||  ||||||||||||  |||| |||||  ||||||| |||| ||| ||||| ||||||||||||| ||| || |||| ||||||| ||| | ||    
T  17947842 ataaatattagttttccatagggaaaatgggtcaaaaatcacttatagaaa-ttctacaacattcgaagtaacggcgcaagaggaaagagttatataaaa 17947940  T
Q  434 tgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    ||||||||||||||||||||||| ||||||||||||||| || || | |||| ||||||||||||||    
T  17947941 tgtatgtaaaggatttgtcgaaccacctttatttttaattcaatgcaatttatctttcctttaagtt 17948007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 363 - 516
Target Start/End: Original strand, 14762938 - 14763090
Alignment:
Q  363 ggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctt 462  Q
    ||||||||||||| |||| ||| ||||| | || ||||||||| |   |||||||||||||| ||| ||||||||||||||||| || |||||| |||||    
T  14762938 ggtcgcaaatcacttatagaaa-ttctacatcactcgaagtactgacacgagagaaaagagttatacagaatgtatgtaaaggagttctcgaaccacctt 14763036  T
Q  463 tatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 516  Q
    ||||||||||||| || | |||| |||| ||||||||| ||||| ||| |||||    
T  14763037 tatttttaatgcaatgcaatttatcttttctttaagtttctgcacttttaactt 14763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 383 - 516
Target Start/End: Complemental strand, 18713842 - 18713709
Alignment:
Q  383 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtatt 482  Q
    |||||||| |||| || ||||||||   |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||| || | |    
T  18713842 aaattctataacactcaaagtaccgtcacgagagaaaagagttatacagaatgtatgtaaaggatttgtcgaaccacctttatttttaaagcaatgcaat 18713743  T
Q  483 ttacctttcctttaagttcctgcaatttaaactt 516  Q
    ||| | || ||||||||| ||||| ||| |||||    
T  18713742 ttatcatttctttaagtttctgcacttttaactt 18713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 526
Target Start/End: Original strand, 31126082 - 31126351
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 375  Q
    ||||||||||||||||| | ||  ||||||| |||||||||||  ||| |  || ||||||||||| |||||||| |||  |||||||||| |||||| |    
T  31126082 tctacatggaaggagtgctaatcttgggattagtttctttccac-ttatttcctatgtataaataatagttttccttagggaaaacgggtctcaaatctc 31126180  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataa------------agaatgtatgtaaaggatttgtcgaactaccttt 463  Q
    |||||   |||||||||||| |||||||| |   || |||||||||||| ||||            | ||||||||||||||||||| ||||| ||||||    
T  31126181 ctatatggaattctaaaacactcgaagtaacaacgcaagagaaaagagtcataaatctcatattttaaaatgtatgtaaaggatttgccgaaccaccttt 31126280  T
Q  464 atttttaatgca-------ttgtattttacctttcctttaagttcctgcaattt-aaacttaatgccttaa 526  Q
    |||| |||||||       |||||||||  |||| |||| |||| ||||||||| ||||||||||| ||||    
T  31126281 atttataatgcacttgcatttgtattttttcttttctttgagtttctgcaatttaaaacttaatgcattaa 31126351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 500
Target Start/End: Complemental strand, 25945889 - 25945847
Alignment:
Q  458 acctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    |||||||||||||||||| || ||||||||| |||||||||||    
T  25945889 acctttatttttaatgcaatgcattttacctctcctttaagtt 25945847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 514
Target Start/End: Complemental strand, 28712461 - 28712360
Alignment:
Q  413 agagaaaagagtgataaagaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattta 511  Q
    |||||||||||| ||| | |||||||||||   |||||||||||| |||||||   |||||||| |||| ||||||||| ||||||||| ||||  ||||    
T  28712461 agagaaaagagtcatatataatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaatgtaatttaccttttctttaagtttctgcgtttta 28712363  T
Q  512 aac 514  Q
    |||    
T  28712362 aac 28712360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 464
Target Start/End: Original strand, 13002854 - 13002906
Alignment:
Q  413 agagaaaagagtgataaagaatgtatgtaaa-ggatttgtcgaactaccttta 464  Q
    |||||||||||| ||| ||||||||||||||  |||||||||||| |||||||    
T  13002854 agagaaaagagtcatacagaatgtatgtaaactgatttgtcgaaccaccttta 13002906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 295 - 566
Target Start/End: Complemental strand, 11361866 - 11361595
Alignment:
Q  295 tgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa 393  Q
    |||| |||||||| ||||||||||| |  | | ||| |||||||||||||||||||| |||  ||||| ||||| | |||||||||||| ||||||||||    
T  11361866 tgatcgtgggattagtttctttccatgc-attttctatgtataaataagagttttccgtagggaaaacaggtcgtagatcacctatacagaattctaaaa 11361768  T
Q  394 cattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcct 493  Q
    || ||||  |||||  ||||| ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  11361767 cactcgacttaccgacgcgagggaaaagagttacaaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcat 11361668  T
Q  494 ttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 566  Q
    |||| || ||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||| |||||    
T  11361667 ttaaatttctgcaatttaaacttaatgcctttactttgcttttaaaacttttttcctgtcaaaagacaccaca 11361595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 277 - 559
Target Start/End: Original strand, 9409083 - 9409370
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattc---gtttctttccaagttagtatctt-tgtataaataagagttttccatagaa-aaacgggtcgcaaa 371  Q
    |||||||||||| ||||||||| ||||||||    |||| |||||| |||| | || | ||||||||||  ||||||||||||   ||||||||||||||    
T  9409083 tctacatggaagaagtgttgatcgtgggattatttgtttttttcca-gttattttcctatgtataaatagtagttttccataggggaaacgggtcgcaaa 9409181  T
Q  372 tcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaa 471  Q
    |||| |||| | |||||||||||| |||||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  9409182 tcacttatatagaattctaaaacactcgaagtaccggcgcaagagaaaaaagttataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 9409281  T
Q  472 tgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgc-ttttaaaaccttttttctgtcgaaaga 559  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||| | || ||||||| ||||||||||  |||||||||| ||||    
T  9409282 tgcattgtattttatctttcctttaagtttatgcaatttaaacttaatacttttactttgctttttaaaaccccttttctgtcgtaaga 9409370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 334 - 516
Target Start/End: Complemental strand, 16675269 - 16675086
Alignment:
Q  334 tataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaaga 432  Q
    ||||||||  ||||||||||| |||||||||||| |||||| | |||| | | |||||||||| |||||||||||| ||||||||| ||||| ||| |||    
T  16675269 tataaatagtagttttccatatgaaaaacgggtcacaaatcccttatagata-ttctaaaacactcgaagtaccggtgcgagagaagagagttatacaga 16675171  T
Q  433 atgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 516  Q
    |||||||| ||| |||||||||||| || |||||||| |||||| |  | ||||||||| ||||| ||| ||||| |||||||||    
T  16675170 atgtatgtaaaatgatttgtcgaaccacttttattttaaatgcaatacaatttaccttttctttatgtttctgcattttaaactt 16675086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 413 - 475
Target Start/End: Complemental strand, 5358102 - 5358040
Alignment:
Q  413 agagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    |||||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  5358102 agagaaaagagtcatacataatgtatgtaaatgatttgtcgaactacctttatttttaatgca 5358040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 433
Target Start/End: Complemental strand, 8140930 - 8140832
Alignment:
Q  335 ataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaa 433  Q
    |||||||  ||||||||||| | ||||  |||| |||||||| |||| |||||||||||||| | |||||||||| ||||||| ||||||| ||| ||||    
T  8140930 ataaatagtagttttccatatggaaaattggtcacaaatcacttata-aaaattctaaaacacttgaagtaccggcgcgagagtaaagagttatatagaa 8140832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 500
Target Start/End: Complemental strand, 4697638 - 4697470
Alignment:
Q  332 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  ||||||||||| | |||| | |||||||||||| |||| ||| |||||||||| || ||| ||||| | ||||||| | ||| ||| |    
T  4697638 tgtataaatagtagttttccatatggaaaatgagtcgcaaatcacttatagaaa-ttctaaaacactcaaagcaccggcgtgagagaacaaagttataca 4697540  T
Q  431 gaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
     |||||||||||   |||| ||||||| |||||||  ||||||||| |  | ||||||||| |||||||||    
T  4697539 aaatgtatgtaatctgattcgtcgaaccaccttta-ctttaatgcaatacaatttaccttttctttaagtt 4697470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 500
Target Start/End: Original strand, 18558473 - 18558515
Alignment:
Q  458 acctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    |||||||||||||||||| || ||||||| |||||||||||||    
T  18558473 acctttatttttaatgcaatgcattttacatttcctttaagtt 18558515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 7e-63; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 277 - 521
Target Start/End: Complemental strand, 20146420 - 20146169
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 375  Q
    ||||||| |||||||||||||| |||||| | |||||||||||||||| |  |||||||||||||||||||||||||| | |||| ||||||||||||||    
T  20146420 tctacatagaaggagtgttgatcgtgggactagtttctttccaagttatttgctttgtataaataagagttttccatatggaaaatgggtcgcaaatcac 20146321  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    |||||||||||||||||||| || ||||||||| ||||||||||||||| |||||| ||||||||||||||||| | | || | ||||||||||||||||    
T  20146320 ctatacaaaattctaaaacactcaaagtaccggtgcgagagaaaagagtcataaag-atgtatgtaaaggattttttggaccatctttatttttaatgca 20146222  T
Q  476 -------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgc 521  Q
           || |||||| ||||| ||||||||| ||||||||||||||||||||    
T  20146221 cttgcatttttatttttccttttctttaagtttctgcaatttaaacttaatgc 20146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 332 - 540
Target Start/End: Original strand, 11013817 - 11014027
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    |||||| ||| |||||||||||||  |||| |||| ||||||||||||||||||||| ||||||| ||||| |||| |   ||||||||||||| |||||    
T  11013817 tgtatatataggagttttccataggtaaaatgggttgcaaatcacctatacaaaattttaaaacactcgaaataccagcttgagagaaaagagtcataaa 11013916  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgccttaactt 529  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||  ||||||||||||| | | || ||||||||||||||||| ||||    
T  11013917 gaatatatgtaaaggatttgtcgagccacctttatttttaatgcattgtactttatttttcctttaagtttcaggaattttaaacttaatgcctttactt 11014016  T
Q  530 tgcttttaaaa 540  Q
    |||||||||||    
T  11014017 tgcttttaaaa 11014027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 332 - 510
Target Start/End: Complemental strand, 33103201 - 33103021
Alignment:
Q  332 tgtataaataagagttttccataga--aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataa 429  Q
    ||||||||||  ||||||||||||   ||||| |||||||||||||||||||| |||||||||||| |||||||||||  | ||||||||||||| |||     
T  33103201 tgtataaatagtagttttccataggggaaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtaccgacgtgagagaaaagagtcatat 33103102  T
Q  430 agaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt 510  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| || | |||| |||||||||||||| |||||||||    
T  33103101 agaatgtatgtaaaggatttgtcgaactacatttatttttaatgcaatgcaatttatctttcctttaagtttctgcaattt 33103021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 344 - 516
Target Start/End: Original strand, 36571655 - 36571826
Alignment:
Q  344 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 442  Q
    |||||||||||| ||||| |||||||||||||| |||| ||| ||||| |||| |||||||||  |  |||||||||||||| ||| | |||||||||||    
T  36571655 agttttccataggaaaaatgggtcgcaaatcacttatagaaa-ttctacaacactcgaagtactagcacgagagaaaagagttatacataatgtatgtaa 36571753  T
Q  443 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 516  Q
    |||||||||||||| |||||||||||||||||| || | || | |||| ||||||||| ||||| ||| |||||    
T  36571754 aggatttgtcgaaccacctttatttttaatgcaatgcaattaatcttt-ctttaagtttctgcagttttaactt 36571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 346 - 516
Target Start/End: Original strand, 22607834 - 22608003
Alignment:
Q  346 ttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaag 444  Q
    |||||||||||  |||||||||||||||||| |||  ||  ||||| |||| |||||||||||  || |||||||||||| ||||| |||||||||||||    
T  22607834 ttttccatagaggaaacgggtcgcaaatcacttatggaat-ttctataacaatcgaagtaccgtcgcaagagaaaagagttataaaaaatgtatgtaaag 22607932  T
Q  445 gatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 516  Q
    ||| ||  |||| |||||||||||||||||| |||| |||| ||||||||||| || ||||||||| |||||    
T  22607933 gatctgctgaaccacctttatttttaatgcaatgtagtttatctttcctttaaatt-ctgcaattttaactt 22608003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 332 - 497
Target Start/End: Original strand, 20150422 - 20150588
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||   |||||||||||  |||||||||| ||||||||||||||| ||||||| |||| |||||||||||  ||||||||||| ||| ||| |    
T  20150422 tgtataaatagttgttttccatagggaaaacgggtctcaaatcacctatacataattctacaacactcgaagtaccgacgcgagagaaaaaagtcataca 20150521  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaa 497  Q
     |||| ||| |||||||||||| ||| ||||||||||||||| || | || |||| |||| ||||||    
T  20150522 aaatgcatgcaaaggatttgtcaaaccacctttatttttaatacaatataatttatcttttctttaa 20150588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 332 - 472
Target Start/End: Original strand, 13202052 - 13202192
Alignment:
Q  332 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  |||||| ||||| ||||||  |||||||||||| |||| ||| ||||| |||| ||||| |||||| ||||||||||| ||| ||| |    
T  13202052 tgtataaatagtagtttttcataggaaaaacatgtcgcaaatcacttatagaaa-ttctacaacactcgaaataccggcgcgagagaaaatagttataca 13202150  T
Q  431 gaatgtatgtaaaggatttgtcgaactacctttatttttaat 472  Q
     ||||||||||||||||||||||||| |||||||||||||||    
T  13202151 taatgtatgtaaaggatttgtcgaaccacctttatttttaat 13202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 500
Target Start/End: Complemental strand, 17615439 - 17615274
Alignment:
Q  335 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaa 433  Q
    |||||||  ||||||||||||  |||||||||| | |||||| |||| ||| ||||| |||| ||||||||| || | |||| |||||||| | | | ||    
T  17615439 ataaatagtagttttccatagggaaaacgggtcacgaatcacttatagaaa-ttctacaacactcgaagtacaggcgggagaaaaaagagttacacataa 17615341  T
Q  434 tgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 500  Q
    ||||||||||||||||||||||| ||||||||||| |||||| || | || |||||| |||||||||    
T  17615340 tgtatgtaaaggatttgtcgaacaacctttattttgaatgcaatgcagttaaccttttctttaagtt 17615274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 383 - 473
Target Start/End: Original strand, 22620063 - 22620153
Alignment:
Q  383 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatg 473  Q
    |||||||| |||| |||||||||| ||||||||||||| ||| ||  | |  ||||||||| |||||||||||| ||||||||||||||||    
T  22620063 aaattctacaacactcgaagtaccagagcgagagaaaatagttattcaaaccgtatgtaaaagatttgtcgaaccacctttatttttaatg 22620153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 395
Target Start/End: Original strand, 13232737 - 13232801
Alignment:
Q  332 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaaca 395  Q
    ||||||||||| ||||||||||||  ||||||| ||||||||||||||| || ||||||||||||    
T  13232737 tgtataaataatagttttccatagggaaaacggatcgcaaatcacctatgcataattctaaaaca 13232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 516
Target Start/End: Complemental strand, 20866293 - 20866221
Alignment:
Q  444 ggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 516  Q
    ||||||||||||| ||||||||||||||||||    | |||| |||| ||||||||| ||||||||| |||||    
T  20866293 ggatttgtcgaaccacctttatttttaatgcaacacaatttatcttttctttaagtttctgcaattttaactt 20866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 494
Target Start/End: Complemental strand, 20886607 - 20886571
Alignment:
Q  458 acctttatttttaatgcattgtattttacctttcctt 494  Q
    |||||||||||||||||| || |||||||||||||||    
T  20886607 acctttatttttaatgcaatgcattttacctttcctt 20886571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 277 - 521
Target Start/End: Original strand, 5599 - 5851
Alignment:
Q  277 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 375  Q
    |||| ||||||||||||||||| |||||||| ||||| |||||||||| |  |||||||||||||||||||||| ||||  ||||||||||| |||||||    
T  5599 tctatatggaaggagtgttgatcgtgggattagtttcattccaagttatttgctttgtataaataagagttttctatagggaaaacgggtcgtaaatcac 5698  T
Q  376 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 475  Q
    ||||||| |||||||||||  | |||||||||   ||||| |||||||| |||| |||||||||||||| |||||||| || ||||||||||||||||||    
T  5699 ctatacagaattctaaaacgcttgaagtaccgacacgagaaaaaagagtcataaggaatgtatgtaaagaatttgtcggaccacctttatttttaatgca 5798  T
Q  476 -ttg------tattttacctttcctttaagttcctgcaatttaaacttaatgc 521  Q
     |||      |||||| ||||| |||||||||  |||||||||||||||||||    
T  5799 cttgcattgttatttttccttttctttaagtttttgcaatttaaacttaatgc 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 280 - 566
Target Start/End: Complemental strand, 21077 - 20793
Alignment:
Q  280 acatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaa-aacgggtcgcaaatcaccta 378  Q
    ||||||||||||||||||| |||||||| |||||||||||  ||| |  || ||||||||||  ||| ||||||||  | || |||||||||||||| ||    
T  21077 acatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaatagtagtcttccatagggacaatgggtcgcaaatcacgta 20979  T
Q  379 tacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattg 478  Q
    || | |||||||||||| | |||||||     |||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||||||    
T  20978 ta-ataattctaaaacacttgaagtactaacacgagagaaaagagtcataaagaatgtatgtaaagaatttgtggaaccacctttattttaaatgcattg 20880  T
Q  479 tattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 566  Q
     |||||  |||||||||||||| ||||| |||||||||||||| || |   | ||||||||||| |||||||||| ||||||||||||    
T  20879 cattttttctttcctttaagtttctgcattttaaacttaatgcatttatactacttttaaaacc-tttttctgtcaaaagacgccaca 20793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 284 - 444
Target Start/End: Complemental strand, 13151 - 12991
Alignment:
Q  284 ggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctataca 382  Q
    ||||||||||||||| |||||||| |||||||| |   ||| | ||| ||||||||||  ||||||||||||  ||||||||||||||||||||||| ||    
T  13151 ggaaggagtgttgatcgtgggattagtttctttactc-ttattttctatgtataaatagtagttttccatagggaaaacgggtcgcaaatcacctatgca 13053  T
Q  383 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaag 444  Q
     |||||||||||| |||||||||  | ||||||||||||||| |||||||||||||||||||    
T  13052 gaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaaag 12991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 344 - 516
Target Start/End: Complemental strand, 17392 - 17221
Alignment:
Q  344 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 442  Q
    ||||||||||||  |||||||||| |||||||| |||| ||| || || |||| |||| ||||||| ||||||||||||||| ||| |||||||||||||    
T  17392 agttttccatagggaaaacgggtcacaaatcacttatagaaa-ttgtacaacactcga-gtaccggcgcgagagaaaagagttatacagaatgtatgtaa 17295  T
Q  443 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 516  Q
    |||||||||||||| |||||||||||||| ||| || | |||| | || ||||||||| ||||| ||| |||||    
T  17294 aggatttgtcgaaccacctttatttttaaagcaatgcaatttatcatttctttaagtttctgcacttttaactt 17221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 357 - 516
Target Start/End: Complemental strand, 4703 - 4546
Alignment:
Q  357 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaac 456  Q
    |||||||||| |||||||| |||| ||| ||||| |||| | || ||||||| ||||||||||||||| ||| |||||| || |||| ||||||| ||||    
T  4703 aaaacgggtcacaaatcacttatagaaa-ttctacaacacttga-gtaccggcgcgagagaaaagagttatacagaatgcatttaaaagatttgtagaac 4606  T
Q  457 tacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 516  Q
     |||||||||||||| ||| || | ||||   || ||||||||| ||||| ||| |||||    
T  4605 cacctttatttttaaagcaatgcaatttattatttctttaagtttctgcacttttaactt 4546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 332 - 496
Target Start/End: Original strand, 374113 - 374275
Alignment:
Q  332 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaag 431  Q
    ||||||||||  ||||||||||||  |||  ||||||||||||| |||| ||| | ||| |||| || |||||| || ||||||||||||||| ||| |     
T  374113 tgtataaatagtagttttccatagggaaaacggtcgcaaatcacttatagaaa-tgctacaacactcaaagtacaggcgcgagagaaaagagt-atacaa 374210  T
Q  432 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttccttta 496  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| || | |||| ||||||||||    
T  374211 aatgtatgtaaagtatttgtcgaaccacctttatttttaatgcaatgcaatttatctttccttta 374275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 332 - 485
Target Start/End: Complemental strand, 20725 - 20572
Alignment:
Q  332 tgtataaataagagttttccatagaaaa-acgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||| ||||||||||||  || |||||||||||||||| || | ||  |||||||||| |||||||||||| ||||||||||||||| ||| |    
T  20725 tgtataaataatagttttccataggcaagacgggtcgcaaatcacttacagaac-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 20627  T
Q  431 gaatgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtatttta 485  Q
     ||||||||| |||  ||||||| ||| ||||||| |||||||||| |||| ||||    
T  20626 taatgtatgtgaaataatttgtcaaaccaccttta-ttttaatgcaatgtaattta 20572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 468
Target Start/End: Original strand, 859 - 996
Alignment:
Q  332 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 430  Q
    ||||||||||  ||||||||||| | ||||||||| ||||||||| |||| ||| ||| |||||| |||||||||||| |||||| | |||||| ||| |    
T  859 tgtataaatagtagttttccatacggaaaacgggttgcaaatcacttatagaaa-ttccaaaacactcgaagtaccggcgcgagaaagaagagttataca 957  T
Q  431 gaatgtatgt-aaaggatttgtcgaactacctttatttt 468  Q
     ||||||||| ||| ||||||| |||| |||||||||||    
T  958 taatgtatgtaaaatgatttgttgaacaacctttatttt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 5989 - 6035
Alignment:
Q  278 ctacatggaaggagtgttgattgtgggattcgtttctttccaagtta 324  Q
    |||||||||| ||||| |||| |||||||| ||||||||||||||||    
T  5989 ctacatggaacgagtgctgatcgtgggattagtttctttccaagtta 6035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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